View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15345_low_4 (Length: 396)

Name: NF15345_low_4
Description: NF15345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15345_low_4
NF15345_low_4
[»] chr3 (3 HSPs)
chr3 (3-377)||(34939664-34940042)
chr3 (3-234)||(22776414-22776645)
chr3 (244-291)||(22776345-22776392)
[»] chr4 (2 HSPs)
chr4 (127-375)||(46637983-46638225)
chr4 (3-60)||(46637947-46638004)
[»] chr6 (1 HSPs)
chr6 (287-375)||(34831518-34831606)
[»] chr7 (2 HSPs)
chr7 (287-377)||(127979-128069)
chr7 (307-354)||(17931036-17931083)
[»] chr2 (1 HSPs)
chr2 (287-377)||(1033832-1033922)
[»] chr1 (1 HSPs)
chr1 (287-377)||(41365468-41365558)
[»] chr5 (1 HSPs)
chr5 (114-193)||(1202158-1202237)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 3 - 377
Target Start/End: Complemental strand, 34940042 - 34939664
Alignment:
Q  3 aaataaacattcatcttcatttcatccaatccaatccagataggcaccatggaaccaaaacatcacacccaaaaaacgcactatgaaaccaagaagcaag 102  Q
    |||||||||||||||||||||||||||| | |||||||||||||        ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34940042 aaataaacattcatcttcatttcatccatttcaatccagatagg--------aaccaaaacatcacacccaaaaaacgcactacgaaaccaagaagcaag 34939951  T
Q  103 aatcaaaatatttcatgccatctgcagataggcaccatggaacgaaggcaatattgcatacccaccatgacacaccaacgcactatctttcaagcttgga 202  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34939950 aatcaaaatatttcatgccatctgcatataggcaccatggaaccaaggcaatattgcatacccaccatgacacaccagcgcactatctttcaagcttgga 34939851  T
Q  203 aaatggaatcactgattgttgactcactcctc------------tgcatccgattcctccaccaccgattccatttctaacgaaggattcagttcaaaca 290  Q
    | | ||||||||||||||||||||||||||||             ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  34939850 agacggaatcactgattgttgactcactcctccgcttctgctatcgcatccgcttcctccaccaccgattccgtttcgaacgaaggattcagttcaaaca 34939751  T
Q  291 gagtcaaagaaacttggagaatcgctcctcttgcgacaccaacatcgacgtcgtaaagaagcttggagaatcgctactttctgatct 377  Q
    |  |||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||| ||||||||||| |||||||||||    
T  34939750 ggttcaaagaaacttggagaatcactcctcttgcaacatcgacatcgacgtcgtaaagaagctaggagaatcgctgctttctgatct 34939664  T

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Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 22776645 - 22776414
Alignment:
Q  3 aaataaacattcatcttcatttcatccaatccaatccagataggcaccatggaaccaaaacatcacacccaaaaaacgcactatgaaaccaagaagcaag 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  22776645 aaataaacattcatcttcatttcatccaatccaatccagataggcaccatggaaccaaaacatcacacccaaaaaacgcaccatggaaccaagaagcaag 22776546  T
Q  103 aatcaaaatatttcatgccatctgcagataggcaccatggaacgaaggcaatattgcatacccaccatgacacaccaacgcactatctttcaagcttgga 202  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||| ||||    
T  22776545 aatcaaaatatttcatgccatctgcagattggcaccatggaaccaaggcaatattgcatacccaccaagacacaccagcacactatctttcaagcctgga 22776446  T
Q  203 aaatggaatcactgattgttgactcactcctc 234  Q
    ||| |||||||| |||||||||||||||||||    
T  22776445 aaacggaatcaccgattgttgactcactcctc 22776414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 22776392 - 22776345
Alignment:
Q  244 ttcctccaccaccgattccatttctaacgaaggattcagttcaaacag 291  Q
    |||||||||||| ||||| |||||| | ||||||||||||||||||||    
T  22776392 ttcctccaccacggattcaatttctgatgaaggattcagttcaaacag 22776345  T

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Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 127 - 375
Target Start/End: Original strand, 46637983 - 46638225
Alignment:
Q  127 cagataggcaccatggaacgaaggcaatattgcatacccaccatgacacaccaacgcactatctttcaagcttggaaaatggaatcactgattgttgact 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  46637983 cagataggcaccatggaaccaaggcaatattgcatacccaccatgagacaccagcgcactatctttcaagcttggaaaacggaatcactgattgttgact 46638082  T
Q  227 cactcctctgcatccgattcctccaccaccgattccatttctaacgaaggattcagttcaaacagagtcaaagaaacttggagaatcgctcctcttgcga 326  Q
    |||||||| ||      |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46638083 cactcctccgc------ttcccccagcaccgattccatttctaacgaaggattcagttcaaacagggtcaaagaaacttggagaatcgctcctcttgcga 46638176  T
Q  327 caccaacatcgacgtcgtaaagaagcttggagaatcgctactttctgat 375  Q
    |||| |||| ||||||||||||||| ||||||||||||| |||||||||    
T  46638177 caccgacattgacgtcgtaaagaagtttggagaatcgctgctttctgat 46638225  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 46637947 - 46638004
Alignment:
Q  3 aaataaacattcatcttcatttcatccaatccaatccagataggcaccatggaaccaa 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46637947 aaataaacattcatcttcatttcatccaatccaatccagataggcaccatggaaccaa 46638004  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 287 - 375
Target Start/End: Complemental strand, 34831606 - 34831518
Alignment:
Q  287 aacagagtcaaagaaacttggagaatcgctcctcttgcgacaccaacatcgacgtcgtaaagaagcttggagaatcgctactttctgat 375  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| | |||||||||    
T  34831606 aacagggtcaaagaagcttggagaatcgctcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaatcgttgctttctgat 34831518  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 287 - 377
Target Start/End: Original strand, 127979 - 128069
Alignment:
Q  287 aacagagtcaaagaaacttggagaatcgctcctcttgcgacaccaacatcgacgtcgtaaagaagcttggagaatcgctactttctgatct 377  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | | |||||||||    
T  127979 aacagggtcaaagaagcttggagaatcgcttctcttgcgacaccgacatcgacgtcgtaaagaagcttggagaatcgttgcgttctgatct 128069  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 17931083 - 17931036
Alignment:
Q  307 gagaatcgctcctcttgcgacaccaacatcgacgtcgtaaagaagctt 354  Q
    ||||||||||||||||||||| ||  ||||||||||| ||||||||||    
T  17931083 gagaatcgctcctcttgcgacgccggcatcgacgtcgcaaagaagctt 17931036  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 287 - 377
Target Start/End: Original strand, 1033832 - 1033922
Alignment:
Q  287 aacagagtcaaagaaacttggagaatcgctcctcttgcgacaccaacatcgacgtcgtaaagaagcttggagaatcgctactttctgatct 377  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| | | |||||||||||    
T  1033832 aacagggtcaaagaagcttggagaatcgctcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatct 1033922  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 287 - 377
Target Start/End: Original strand, 41365468 - 41365558
Alignment:
Q  287 aacagagtcaaagaaacttggagaatcgctcctcttgcgacaccaacatcgacgtcgtaaagaagcttggagaatcgctactttctgatct 377  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||| | |||||||||||    
T  41365468 aacagggtcaaagaagcttggagaatcgctcctcttgcgacaccggcatcgacgttgtaaagaagcttggagaatcgttgctttctgatct 41365558  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 1202237 - 1202158
Alignment:
Q  114 ttcatgccatctgcagataggcaccatggaacgaaggcaatattgcatacccaccatgacacaccaacgcactatctttc 193  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| | |||||| ||||    
T  1202237 ttcatgccatctgcagatagccaccatggaaccaaggcaatattgcatacccaccaggacacaccagcacactatatttc 1202158  T

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