View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15345_low_8 (Length: 246)
Name: NF15345_low_8
Description: NF15345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15345_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 1742655 - 1742425
Alignment:
| Q |
1 |
cctgaggtgaaggaatttccattggcattgcctggtggtgaagtgaggaagaggaagagagggaggaaacctaaagtgaaagcgcatttggaggaagaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1742655 |
cctgaggtgaaggaatttccattggcattgcctgctggtgaagtgaggaagaggaagagagggaggaaacctaaagtgaaagcgcatttggaggaagaga |
1742556 |
T |
|
| Q |
101 |
ttgtgaataaaaacggtgttgtgattgattttggtgctttatcggaggtggagcatccttttgcagcggagattgcgagaaggacggaagggttaaagga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1742555 |
ttgtgaataaaaacggtgttgtgattgattttgctgctttatcggaggttgagcatccttttgctgcggagattgcgagaaggacggaagggttaaagga |
1742456 |
T |
|
| Q |
201 |
ggaagaggagttgttagggtttttgagtgat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1742455 |
ggaagaggagttgttagggtttttgagtgat |
1742425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University