View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15345_low_9 (Length: 236)
Name: NF15345_low_9
Description: NF15345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15345_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 1742883 - 1742663
Alignment:
| Q |
16 |
aattctacacgcgatatcgtcactcctaaaatcgatccatcaaccttcaaccacagcgctggctcccaccgcacctactcccgtcctcaccgtcgatgtc |
115 |
Q |
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| T |
1742883 |
aattctacacgcgaaatcgtcactcctaaaatcgatccatcaaccttcaaccacagcgctggctcccaccgcacctactcccgtcctcaccgtcgatgtc |
1742784 |
T |
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| Q |
116 |
gcgtcgcacctccgcttcttcctactcccactctcccctccgaccaccgcatcatcatcgattacctcaaacagttcatcagagaagatcccaagttcga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1742783 |
gcgtcgcacctccgcttcttcctactcccactctcccctccgaccaccgcatcatcatcgattacctcaaacagttcatcagagaagatcccaagttcga |
1742684 |
T |
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| Q |
216 |
cacggtcgagcttcggaatcc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
1742683 |
cacggtcgagcttcggaatcc |
1742663 |
T |
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Back To:
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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 31799116 - 31799192
Alignment:
| Q |
116 |
gcgtcgcacctccgcttcttcctactcccactctcccctccgaccaccgcatcatcatcgattacctcaaacagttc |
192 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | | ||||||||||| ||||| |
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| T |
31799116 |
gcgtcgcaccaccgtttcttcctactcccactctcccctccgaccaccgcatcattagctattacctcaaatagttc |
31799192 |
T |
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