View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15346_high_5 (Length: 383)
Name: NF15346_high_5
Description: NF15346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15346_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 52858997 - 52858636
Alignment:
| Q |
1 |
caaccccacccaaaccaccaacttgcttcttattcttctaattaa-ttaattgaaatcatcaaataccatcttccttcttcaattgtctaattgtcttag |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52858997 |
caaccccacccaaaccaccaacttgcttcttattcttctaattaaattaattgaaatcatcaaataccatcttccttcttcaattgtctaattgtcttag |
52858898 |
T |
|
| Q |
100 |
tctccgcacacagattaattgattgagaattgaannnnnnnnnnnnnnnnnnnngtatcgtccaccttcctcatcggcttcttcttcttcctcttcgtct |
199 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52858897 |
tctccgcacacagattaattgattgagaattgaaatcatcatcatcatcat---gtatcgtccaccttcctcatcggcttcttcttcttcctcttcgtct |
52858801 |
T |
|
| Q |
200 |
cagcaacaacagagctccatcagtcaaacgggtctcacaaggtatggttcagcacctagctctctcctcaacaccacggtggatgccatcataggaggat |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52858800 |
cagcaacaacagagctccatcagtcaaacgggtctcacaaggtatggttcagcacctagctctctcctcaacaccacggtggatgccatcataggaggat |
52858701 |
T |
|
| Q |
300 |
cacgccttcttcctggaacgggacaacattatttctctgatgactctacccagcagcaacagcag |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52858700 |
cacgccttcttcctggaacgggacaacattatttctctgatgactctacccagcagcaacagcag |
52858636 |
T |
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