View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15346_low_1 (Length: 723)
Name: NF15346_low_1
Description: NF15346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15346_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 220 - 708
Target Start/End: Original strand, 8250399 - 8250875
Alignment:
| Q |
220 |
caatcagaacaaatttgaagatggactattttggtagatggttcacaaatacgatagacgggtacttaaaaatagtttagaatttcattgtttaaagaca |
319 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||| |||| |||| || | ||||||||||||||||||||||||| || ||||||||| |
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| T |
8250399 |
caatcagaacaaatttgaaggtggactactttggtagatggttcacgaatatgataaacagatacttaaaaatagtttagaatttcaatgattaaagaca |
8250498 |
T |
|
| Q |
320 |
tcgttttctaaagaagtttatagtattcatcgtcctcacgtaaggaagggaataggtcaagttgtccgtcaagggtctat-atgtggcctacttaaagtc |
418 |
Q |
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||||||| |||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| |||||||||||||||||| |
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| T |
8250499 |
tcgttttttaaagaagctcatagtattcatcgtcctcacgtaaggaagggaataagtcaagctgtccgtcaggggtctatgatgtggcctacttaaagtt |
8250598 |
T |
|
| Q |
419 |
cggttcaacctaacttatttagtaaataggttaattaggttcatgccttt-taaaaagcccattaatataaattggtcagactaaggcgtgtagaaaagc |
517 |
Q |
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||| |||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
8250599 |
cggctcaacctaacttgtttagtaaatagattaattaggttcacgcctttgaaaaaagcccattaatataaattggtaagactaaggtgtgtagaaaagc |
8250698 |
T |
|
| Q |
518 |
ctagtatgactaccaagccgacccatgtatgtgttacaaaactcttagtattactttctagtttcaattccaacagcacatatactttttggtattactc |
617 |
Q |
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| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
8250699 |
c---------------gccgacccatatatgtgttacaaaactcttagtattactttctagtttcaattccaacagtacatatactttttggtattaccc |
8250783 |
T |
|
| Q |
618 |
a-ttaatctcttactattgtcattctcatttcatttcgaattactaggtaaggaaccttattaccaaaaacaaaagacaataggtcaaatgt |
708 |
Q |
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| T |
8250784 |
atttaatctcttactattatcattctcatttcattttgaagtaccaggtaaggaaccttattaccaaaaacaaaagacaataggtcaaatgt |
8250875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 8250074 - 8250161
Alignment:
| Q |
45 |
atctacatgagagtttggcatcaagattttgaagttcaatagggtaactttgatttttgtgtgtattttgaatgtgagttgtaagaga |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8250074 |
atctacatgagagtttggcatcaagattttgatgttcaatagggtaactttgatttttgtgtgtattttgaatgtgagttgtaagaga |
8250161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 679
Target Start/End: Complemental strand, 49832293 - 49832162
Alignment:
| Q |
550 |
gttacaaaactcttagtattactttctagtttcaattccaac-agcacatatactttttggtattactca-ttaatctcttactattgtcattctcattt |
647 |
Q |
| |
|
|||||||||||||| ||||||| ||| || |||||| ||| | ||| ||||||||||||||||| | ||||||||||||| ||||||||||||| | |
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| T |
49832293 |
gttacaaaactcttggtattaccctcttattccaattctaacgaatacacatactttttggtattaccctcttaatctcttactgttgtcattctcatct |
49832194 |
T |
|
| Q |
648 |
catttcgaattactaggtaaggaaccttatta |
679 |
Q |
| |
|
|||| | |||||| | |||||||||||||||| |
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| T |
49832193 |
cattccaaattacaaagtaaggaaccttatta |
49832162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 550 - 679
Target Start/End: Complemental strand, 44327205 - 44327074
Alignment:
| Q |
550 |
gttacaaaactcttagtattactttctagtttcaattccaac-agcacatatactttttggtattac--tcattaatctcttactattgtcattctcatt |
646 |
Q |
| |
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||||||||||||||||| ||||| ||| ||| ||||||||| || |||| ||||||| |||||||| ||| |||||| |||||||| |||||||||| |
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| T |
44327205 |
gttacaaaactcttagtgttactctcttattttaattccaacgagtacatgtacttttgggtattaccgtca-taatcttttactattatcattctcatc |
44327107 |
T |
|
| Q |
647 |
tcatttcgaattactaggtaaggaaccttatta |
679 |
Q |
| |
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| ||||| |||||| | |||||||||| ||||| |
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| T |
44327106 |
ttatttcaaattacaaagtaaggaaccctatta |
44327074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 554 - 679
Target Start/End: Complemental strand, 32018531 - 32018404
Alignment:
| Q |
554 |
caaaactcttagtattactttctagtttcaattccaac-agcacatatactttttggtattactc-attaatctcttactattgtcattctcatttcatt |
651 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||||| ||| || ||| |||||||| |||||||| | |||||||||||| ||||||||||| ||| | ||| |
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| T |
32018531 |
caaaactcttggtattactctcttatttcaattctaacgagtacacatacttttgggtattaccctattaatctcttattattgtcattcgcatcttatt |
32018432 |
T |
|
| Q |
652 |
tcgaattactaggtaaggaaccttatta |
679 |
Q |
| |
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|| |||||| | |||| ||||| ||||| |
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| T |
32018431 |
tcaaattacaaagtaaagaaccatatta |
32018404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 659
Target Start/End: Original strand, 8258642 - 8258749
Alignment:
| Q |
551 |
ttacaaaactcttagtattactttctagtttcaattccaaca-gcacatatactttttggtattactcattaatctcttactattgtcattctcatttca |
649 |
Q |
| |
|
|||||||| |||| ||||||| ||| |||||||||||||| | ||| ||||||||| |||||||| ||||||| ||||||||| |||||||||||| |
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| T |
8258642 |
ttacaaaattcttgatattactctcttatttcaattccaacaagtacacatacttttttatattactctttaatct--tactattgttattctcatttca |
8258739 |
T |
|
| Q |
650 |
tttcgaatta |
659 |
Q |
| |
|
|||| ||||| |
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|
| T |
8258740 |
tttcaaatta |
8258749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 645
Target Start/End: Original strand, 43344927 - 43344974
Alignment:
| Q |
599 |
atactttttggtattac-tcattaatctcttactattgtcattctcat |
645 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
43344927 |
atactttttggtattacctttttaatctcttactattgtcattctcat |
43344974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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