View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15346_low_10 (Length: 332)
Name: NF15346_low_10
Description: NF15346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15346_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 2679929 - 2679628
Alignment:
| Q |
13 |
aatatcatatcgttttctccactgtaaaaatttaccttgtgtaggatctaaagaaggataatgtattaatgatagctcacttagccattacagtacatgt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
2679929 |
aatatcatatcgttttctccactgtaaaaatttaccttgtgtaggatctaaagaaggataatgtattaatgatagatcacttagccattacagcacatgt |
2679830 |
T |
|
| Q |
113 |
tagctaaatgaagaaaaggctcaaagtgttacaagttttgtattggtggtcttaccaaaaatgaagtggttcaaactaccattaggcatgtattcataga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2679829 |
tagctaaatgaagaaaaggctcaaagtgttacaagttttgtattggtggtcttaccaaaaatgaagtggttcaaactaccattaggcatgtattcataga |
2679730 |
T |
|
| Q |
213 |
ctaacattctttcatttccataagtgcacccacccaaaacactcacaagattgcggtgttgtagcttggctaccaatccaacttcattcatgaactctgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2679729 |
ctaacattctttcatttccataagtgcacccacccaaaacactcacaagattgcggtgttgtagcttggctaccaatccaacttcattcatgaactctgt |
2679630 |
T |
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| Q |
313 |
ga |
314 |
Q |
| |
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|| |
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| T |
2679629 |
ga |
2679628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 3051153 - 3051446
Alignment:
| Q |
13 |
aatatcatatcgttttctccactgtaaaaatttaccttgtgtaggatctaaagaaggataatgtattaatgatagctcacttagccattacagtacatgt |
112 |
Q |
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||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| | || ||||||||||||||||||||||||||||| |
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| T |
3051153 |
aatatcatatcgttttctccactgtaaaattttcccttgtacaggatctaaagaaggacagtg--------atagctcacttagccattacagtacatgt |
3051244 |
T |
|
| Q |
113 |
tagctaaatgaagaaaaggctcaaagtgttacaagttttgtattggtggtcttaccaaaaatgaagtggttcaaactaccattaggcatgtattcataga |
212 |
Q |
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|| || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3051245 |
tatctgaatgaagaaaaagctcaaagtattacaagttttgtattggtggtcttaccaaaaatgaagtggttcaaactaccattaggcatgtattcataga |
3051344 |
T |
|
| Q |
213 |
ctaacattctttcatttccataagtgcacccacccaaaacactcacaagattgcggtgttgtagcttggctaccaatccaacttcattcatgaactctgt |
312 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3051345 |
ctaacattctttcatttccataagtgcaccttcccaaaacactcacaagattgcggcgttgtagcttggctaccaatccaacttcattcatgaactctgt |
3051444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 31702117 - 31702057
Alignment:
| Q |
165 |
taccaaaaatgaagtggttcaaactaccattaggcatgtattcatagactaacattctttc |
225 |
Q |
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||||||||||||||| || || |||||||||| |||||||||||| ||||||||| |||| |
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| T |
31702117 |
taccaaaaatgaagtagtccaggctaccattagccatgtattcataaactaacattttttc |
31702057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 31717438 - 31717378
Alignment:
| Q |
165 |
taccaaaaatgaagtggttcaaactaccattaggcatgtattcatagactaacattctttc |
225 |
Q |
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||||||||||||||| || | |||||||||| |||||||||||| ||||||||| |||| |
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| T |
31717438 |
taccaaaaatgaagtagtctaggctaccattagccatgtattcataaactaacattttttc |
31717378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 31724663 - 31724603
Alignment:
| Q |
165 |
taccaaaaatgaagtggttcaaactaccattaggcatgtattcatagactaacattctttc |
225 |
Q |
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||||||||||||||| || | |||||||||| |||||||||||| ||||||||| |||| |
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| T |
31724663 |
taccaaaaatgaagtagtctaggctaccattagccatgtattcataaactaacattttttc |
31724603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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