View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15346_low_11 (Length: 324)

Name: NF15346_low_11
Description: NF15346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15346_low_11
NF15346_low_11
[»] chr8 (2 HSPs)
chr8 (39-127)||(41912539-41912627)
chr8 (259-317)||(41912348-41912406)
[»] chr4 (4 HSPs)
chr4 (41-126)||(42978824-42978909)
chr4 (42-126)||(32082539-32082623)
chr4 (41-126)||(42977267-42977352)
chr4 (82-126)||(44251674-44251718)
[»] chr1 (1 HSPs)
chr1 (42-126)||(19251068-19251152)
[»] chr6 (2 HSPs)
chr6 (41-126)||(8745501-8745586)
chr6 (41-126)||(8752705-8752790)
[»] chr5 (5 HSPs)
chr5 (41-126)||(8874179-8874264)
chr5 (41-126)||(36621131-36621216)
chr5 (41-126)||(39101784-39101869)
chr5 (41-126)||(39103316-39103401)
chr5 (82-126)||(11772646-11772690)
[»] chr7 (1 HSPs)
chr7 (41-125)||(9532519-9532603)
[»] chr3 (1 HSPs)
chr3 (42-126)||(31657023-31657107)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 41912627 - 41912539
Alignment:
Q  39 gtcgttagccaacaagacctttttgtactagagtttgaaggacgggacgaaaaacaaaatattattaacttacaatggttgttttagag 127  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41912627 gtcgttagccaacaagacctttttgtactagagtttgaaagacgggacgaaaaacaaaatattattaacttacaatggttgttttagag 41912539  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 41912406 - 41912348
Alignment:
Q  259 cctcaccagtgtcccagtccatacaaaaataactaggaacaaagatatcgaagcaattg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41912406 cctcaccagtgtcccagtccatacaaaaataactaggaacaaagatatcgaagcaattg 41912348  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 42978824 - 42978909
Alignment:
Q  41 cgttagccaacaagacctttttgtactagagtttgaaggacgggacgaaaaacaaaatattattaacttacaatggttgttttaga 126  Q
    ||||||||| |||| | ||||||||  ||||||||| ||  |||||||||| ||||| ||||||||||||||| | ||||||||||    
T  42978824 cgttagccagcaaggcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaaattattaacttacaaggattgttttaga 42978909  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 32082539 - 32082623
Alignment:
Q  42 gttagccaacaagacctttttgtactagagtttga-aggacgggacgaaaaacaaaatattattaacttacaatggttgttttaga 126  Q
    ||||||||||||| | ||||||||  ||||||||| |||| |||||||||| |||||  |||||||||||||  |||| |||||||    
T  32082539 gttagccaacaaggcgtttttgtaacagagtttgacagga-gggacgaaaagcaaaaagttattaacttacaggggttattttaga 32082623  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 42977352 - 42977267
Alignment:
Q  41 cgttagccaacaagacctttttgtactagagtttgaaggacgggacgaaaaacaaaatattattaacttacaatggttgttttaga 126  Q
    ||||||||| |||| | ||||||||  ||||||||| ||  |||||||||| |||||  ||||||||||| |  ||||||||||||    
T  42977352 cgttagccagcaaggcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttaaatgggttgttttaga 42977267  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 44251718 - 44251674
Alignment:
Q  82 gggacgaaaaacaaaatattattaacttacaatggttgttttaga 126  Q
    |||||||||| |||||  |||||||||||||| ||||||||||||    
T  44251718 gggacgaaaatcaaaaagttattaacttacaagggttgttttaga 44251674  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 19251068 - 19251152
Alignment:
Q  42 gttagccaacaagacctttttgtactagagtttgaaggacgggacgaaaaacaaaatattattaacttacaatggttgttttaga 126  Q
    |||||||| |||||| ||||||||  |||||||||  |  |||||||||| ||||| |||||||| |||||  ||||||||||||    
T  19251068 gttagccagcaagacgtttttgtaacagagtttgactggagggacgaaaagcaaaaaattattaatttacaggggttgttttaga 19251152  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 8745586 - 8745501
Alignment:
Q  41 cgttagccaacaagacctttttgtactagagtttgaaggacgggacgaaaaacaaaatattattaacttacaatggttgttttaga 126  Q
    ||||||||| |||| | ||||||||  ||||||||| ||  |||||||||| |||||  ||||||||||||   ||||||||||||    
T  8745586 cgttagccagcaaggcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacgggggttgttttaga 8745501  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 8752705 - 8752790
Alignment:
Q  41 cgttagccaacaagacctttttgtactagagtttgaaggacgggacgaaaaacaaaatattattaacttacaatggttgttttaga 126  Q
    ||||||||| |||||| ||||||||  | ||||||| ||  |||||||||| |||||  |||||||||| ||  ||||||||||||    
T  8752705 cgttagccagcaagacgtttttgtaacaaagtttgacgggagggacgaaaagcaaaaggttattaacttgcaggggttgttttaga 8752790  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 8874179 - 8874264
Alignment:
Q  41 cgttagccaacaagacctttttgtactagagtttgaaggacgggacgaaaaacaaaatattattaacttacaatggttgttttaga 126  Q
    ||||||||| |||||| ||||||||  ||||||||| |   ||||| |||| |||||  |||||||||||||  ||||||||||||    
T  8874179 cgttagccagcaagacatttttgtaacagagtttgacgagagggacaaaaagcaaaaagttattaacttacaggggttgttttaga 8874264  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 36621131 - 36621216
Alignment:
Q  41 cgttagccaacaagacctttttgtactagagtttgaaggacgggacgaaaaacaaaatattattaacttacaatggttgttttaga 126  Q
    ||||||||| |||| | ||||||||  ||||||||| ||  |||||||||| |||||  |||||||  ||||| ||||||||||||    
T  36621131 cgttagccagcaaggcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaatgtacaagggttgttttaga 36621216  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 39101869 - 39101784
Alignment:
Q  41 cgttagccaacaagacctttttgtactagagtttgaaggacgggacgaaaaacaaaatattattaacttacaatggttgttttaga 126  Q
    ||||||||| |||| | ||||||||  ||||||||| ||  |||||||||| |||||  |||||||| ||||  ||||||||||||    
T  39101869 cgttagccagcaaggcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacatacaggggttgttttaga 39101784  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 39103316 - 39103401
Alignment:
Q  41 cgttagccaacaagacctttttgtactagagtttgaaggacgggacgaaaaacaaaatattattaacttacaatggttgttttaga 126  Q
    ||||||||| |||| | |||||||| |||||||||| ||  |||||||||  |||||  ||||||||||| |  ||||||||||||    
T  39103316 cgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaacgcaaaaagttattaacttatacgggttgttttaga 39103401  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 11772646 - 11772690
Alignment:
Q  82 gggacgaaaaacaaaatattattaacttacaatggttgttttaga 126  Q
    |||||||||| |||||  |||||||||||||| ||||||||||||    
T  11772646 gggacgaaaatcaaaaagttattaacttacaagggttgttttaga 11772690  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 9532519 - 9532603
Alignment:
Q  41 cgttagccaacaagacctttttgtactagagtttgaaggacgggacgaaaaacaaaatattattaacttacaatggttgttttag 125  Q
    ||||||||| |||||| ||||||||  ||||||||| ||  |||||||||| |||||  ||||||| ||||   |||||||||||    
T  9532519 cgttagccagcaagacgtttttgtaacagagtttgatgggagggacgaaaagcaaaaagttattaatttactggggttgttttag 9532603  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 31657107 - 31657023
Alignment:
Q  42 gttagccaacaagacctttttgtactagagtttgaaggacgggacgaaaaacaaaatattattaacttacaatggttgttttaga 126  Q
    |||||||| |||| | ||||||||  ||||||||| ||  |||||||||| |||||  |||||||||||||  | ||||||||||    
T  31657107 gttagccagcaaggcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacagggattgttttaga 31657023  T

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