View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15346_low_13 (Length: 249)
Name: NF15346_low_13
Description: NF15346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15346_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 41216219 - 41216453
Alignment:
| Q |
1 |
atattcatttcttgtgtctgcactagcaagattaataatacggcacactatattaagagacaaaatgtggtaggagagaaccacatgacaacaatcccac |
100 |
Q |
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| T |
41216219 |
atattcatttcttgtgtctgcactagcaagattaataatacggtacactatattaagagacaaaatgtggtaggagagaagcacatgacaacaatcccac |
41216318 |
T |
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| Q |
101 |
taatcttttttggaagtgcttgagttctcatcctgccaagttgcttgccattgcttgtcataaaatgtagtctcctccaataatttcttaaaagtatcaa |
200 |
Q |
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| T |
41216319 |
taatcttttctggaagtgcttgagttctcatcctgccaagttgcttgccattgcttgtcataaaatgtagtctcctccaataatttcttaaaagtatcaa |
41216418 |
T |
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| Q |
201 |
catcctcattcttcctgatgagaagtactcccccc |
235 |
Q |
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| T |
41216419 |
catcctcattcttcctgatgagaagtactcccccc |
41216453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 41213865 - 41214024
Alignment:
| Q |
17 |
tctgcactagcaagattaataatacggcacactatattaagagacaaaatgtggtaggagagaaccacatgacaacaatcccactaatcttttttggaag |
116 |
Q |
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|||| |||||||||||||||| || ||||||||||||||||||||||| |||| ||||| ||| |||| ||| ||||||||||||| |||||||||| |
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| T |
41213865 |
tctgtactagcaagattaatagtagagcacactatattaagagacaaaagttggtgggagataactacataacagcaatcccactaatattttttggaac |
41213964 |
T |
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| Q |
117 |
tgcttgagttctcatcctgccaagttgcttgccattgcttgtcataaaatgtagtctcctccaata |
182 |
Q |
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| T |
41213965 |
tgctggagttctcatccagcaaagttgc------ttgcttgtcataaaatgtagtctcctccaata |
41214024 |
T |
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