View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15346_low_2 (Length: 694)
Name: NF15346_low_2
Description: NF15346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15346_low_2 |
 |  |
|
| [»] scaffold0725 (1 HSPs) |
 |  |  |
|
| [»] scaffold0088 (1 HSPs) |
 |  |  |
|
| [»] scaffold0005 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 22 - 474
Target Start/End: Complemental strand, 34293468 - 34293005
Alignment:
| Q |
22 |
taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaa |
121 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34293468 |
taagtcagtctcttctctccaccgatccaccaaaacagcattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctatcaacgccaa |
34293369 |
T |
 |
| Q |
122 |
aatcgtgccctactacaccacaacacaccaatagaaaatagaacacgcgacg----------aaaaaagttgtcaccgtttcgaagaggaacactaagtg |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34293368 |
aatcgtgccctactccaccacaacacaccaatagaaaatagaacacgcgacaggtcgaaacaaaaaaagttgtcaccgtttcgaagaggaacactaagtg |
34293269 |
T |
 |
| Q |
212 |
aaactctcacacataaaattgatgttattgaatgagtgaaactctaagtgtaactctcacacttaaaattgannnnnnnnnnnn-actgtaaatcctata |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34293268 |
aaactctcacacataaaattgatgttattgaatgagtgaaactctaagtgtaactctcacacttaaaattgatattattttttttactgtaaatcctata |
34293169 |
T |
 |
| Q |
311 |
tgaatatttaaaattgatattaaggcatgaatgattactagaaaaatagaactaatgagtactgagatgcgataatctaacaaaggattgatctcattct |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34293168 |
tgaatatttaaaattgatattaaggcatgaatgattactagaaaaatagaactaatgagtactgagatgcgataatctaacaaaggattgatctcattct |
34293069 |
T |
 |
| Q |
411 |
gtagataaaataaagaaatgaagtctcattctatagacaaaaaggaatttgaatttatagttct |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34293068 |
gtagataaaataaagaaatgaagtctcattctatagacaaaaaggaatttgaatttatagttct |
34293005 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 473 - 685
Target Start/End: Complemental strand, 34567473 - 34567261
Alignment:
| Q |
473 |
ctatttttcctttagatatataaacatttattatttcacgtagagcaagatggattgtcttactgaattgggaaaggaagctgtcacaaaattgggagaa |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34567473 |
ctatttttcctttagatatataaacatttattatttcacataaaggaagatggattgtcttactgaattgggaaaggaaactgtcacaaaattgggagaa |
34567374 |
T |
 |
| Q |
573 |
ttggttgtggagtcaaccatgaagcatttcaaatatttgacacaacacnnnnnnntcacaacaaatttggaggaagaacttgagaggttgaaaatgataa |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34567373 |
ttggttgtggagtcaaccatgaagcatttcaaatatttgacacaacacaaaaaaatcacaacaaatttggaggaagaacttgagaggttgaaaatgataa |
34567274 |
T |
 |
| Q |
673 |
aacaagcattgca |
685 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34567273 |
aacaagcattgca |
34567261 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 503 - 685
Target Start/End: Complemental strand, 34292932 - 34292750
Alignment:
| Q |
503 |
ttatttcacgtagagcaagatggattgtcttactgaattgggaaaggaagctgtcacaaaattgggagaattggttgtggagtcaaccatgaagcatttc |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34292932 |
ttatttcacgtagagcaagatggattgtcttactgaattgggaaaggaagctgtcacaaaattgggagaattggttgtggagtcaatcatgaagcatttc |
34292833 |
T |
 |
| Q |
603 |
aaatatttgacacaacacnnnnnnntcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgca |
685 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34292832 |
aaatatttgacacaacacaaaaaaatcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgca |
34292750 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 32979455 - 32979585
Alignment:
| Q |
22 |
taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaa |
121 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||| |||||||| |||||||||||||||| || || ||| |||||| |
|
|
| T |
32979455 |
taagtcagactcttctctccaccgatccaccaaaacagcatcgtcgccaccactgcacaaccaccatgtcatcaccaccttcacctcctatcaccgccaa |
32979554 |
T |
 |
| Q |
122 |
aatcgtgccctactacaccacaacacaccaa |
152 |
Q |
| |
|
|| | || |||||| |||||||||||||||| |
|
|
| T |
32979555 |
aaccatgacctactccaccacaacacaccaa |
32979585 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 10365992 - 10366137
Alignment:
| Q |
23 |
aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa |
122 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || ||| ||||||||| ||||||||| || ||||||||||||||||| ||||| ||| | |||| |
|
|
| T |
10365992 |
aagtcagactcttctctccaccgatccaccaaa-cagcatcatcgacaccattgcaaaacctccgcgtcatcaccaccttcaccttctatcatctgcaaa |
10366090 |
T |
 |
| Q |
123 |
atcgtgccctactacaccacaacacaccaatagaaaatagaacacgc |
169 |
Q |
| |
|
| ||||||||||| ||||||||||| ||| |||||||| ||||||| |
|
|
| T |
10366091 |
accgtgccctactccaccacaacaccccaccagaaaataaaacacgc |
10366137 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0725 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: scaffold0725
Description:
Target: scaffold0725; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 1297 - 1444
Alignment:
| Q |
22 |
taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaa |
121 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
1297 |
taagtcagattcttctctccaccgatccaccaaaacagcatcatcgacaccactgcaaaaccaccacgtcatcaccctcttcaccttctatcaacgccaa |
1396 |
T |
 |
| Q |
122 |
aatcgtgccctactacaccacaacacaccaatagaaaatagaacacgc |
169 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| ||||||| |
|
|
| T |
1397 |
aatcgtgccctaatccaccacaacacaccaatagaaaataaaacacgc |
1444 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0088 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 27213 - 27360
Alignment:
| Q |
22 |
taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaa |
121 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
27213 |
taagtcagattcttctctccaccgatccaccaaaacagcatcgtcgacaccactgcaaaatcaccacgtcatcaccctcttcaccttctatcaacgccaa |
27312 |
T |
 |
| Q |
122 |
aatcgtgccctactacaccacaacacaccaatagaaaatagaacacgc |
169 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
27313 |
aatcgtgccctactccaccacagcacaccaatagaaaataaaacacgc |
27360 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 47896880 - 47897026
Alignment:
| Q |
23 |
aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa |
122 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
47896880 |
aagtcagactcttctctccaccgatccaccaaaacagcatcgtcgacaccactacaaaaccaccacgtcatcaccaccttcacgttctatcatcgccaaa |
47896979 |
T |
 |
| Q |
123 |
atcgtgccctactacaccacaacacaccaatagaaaatagaacacgc |
169 |
Q |
| |
|
| ||||||||||| |||||||||||||||| |||||||| ||||||| |
|
|
| T |
47896980 |
accgtgccctactccaccacaacacaccaacagaaaataaaacacgc |
47897026 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 8039422 - 8039562
Alignment:
| Q |
23 |
aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa |
122 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
8039422 |
aagtcatactcttctctccatcgatccaccaaaacatcatcttcgacaccattgcaaaaccaccgcgtcatcaccaccttcaccttctatcatcgccaaa |
8039521 |
T |
 |
| Q |
123 |
atcgtgccctactacaccacaacacaccaatagaaaatagaaca |
166 |
Q |
| |
|
| | ||||| ||| ||||||||||||| |||||||| |||| |
|
|
| T |
8039522 |
accttgccccact---ccacaacacaccaccagaaaataaaaca |
8039562 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 27786629 - 27786483
Alignment:
| Q |
23 |
aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa |
122 |
Q |
| |
|
||||| ||||| |||||| || |||||||||||||| ||| |||| |||||||| |||| |||||||| ||||||||||||| || || | | ||| ||| |
|
|
| T |
27786629 |
aagtcggactcttctctcaactgatccaccaaaacatcatcgtcgccaccactgtaaaatcaccacgttatcaccaccttcacctcctataatcgcaaaa |
27786530 |
T |
 |
| Q |
123 |
atcgtgccctactacaccacaacacaccaatagaaaatagaacacgc |
169 |
Q |
| |
|
| ||| |||||| |||||||||||||||| | |||||||||||||| |
|
|
| T |
27786529 |
actgtgacctactccaccacaacacaccaacaaaaaatagaacacgc |
27786483 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 6e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 9566998 - 9567146
Alignment:
| Q |
22 |
taagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccacc-ttcatcttctgtcaacgcca |
120 |
Q |
| |
|
||||| |||||| |||||||| |||| |||||||||| ||| |||||||||||||||||||||||||||| |||||||| |||| ||||| ||||||||| |
|
|
| T |
9566998 |
taagttagactcttctctccatcgattcaccaaaacagcatcgtcgacaccactgcaaaaccaccacgtcgtcaccacctttcaccttctatcaacgcca |
9567097 |
T |
 |
| Q |
121 |
aaatcgtgccctactacaccacaacacaccaatagaaaatagaacacgc |
169 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||| ||||||| |
|
|
| T |
9567098 |
aaatcgtgccctactccaccacaacacaccaatataaaataaaacacgc |
9567146 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 11366920 - 11366985
Alignment:
| Q |
23 |
aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccac |
88 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
11366920 |
aagtcagacttttctctccactgatccaccaaaacagcatcgttgacaccactgcaaaaccaccac |
11366985 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 11366980 - 11367054
Alignment:
| Q |
94 |
caccaccttcatcttctgtcaacgccaaaatcgtgccctactacaccacaacacaccaatagaaaatagaacacgc |
169 |
Q |
| |
|
||||||||||| ||||| ||| |||||||| |||||||| || |||||||||| ||||| | |||||| ||||||| |
|
|
| T |
11366980 |
caccaccttcaccttctatcatcgccaaaaccgtgccctcctccaccacaaca-accaacaaaaaataaaacacgc |
11367054 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 11387658 - 11387804
Alignment:
| Q |
23 |
aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa |
122 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||| || |||| |
|
|
| T |
11387658 |
aagtcagactcttctctccaccgatccaccaaaacagcatagtcgacaccactgcaaaaccaccacgtcatcatcaccttcaccttctatcatcgtcaaa |
11387757 |
T |
 |
| Q |
123 |
atcgtgccctactacaccacaacacaccaatagaaaatagaacacgc |
169 |
Q |
| |
|
||| |||| |||| ||||||||||||| || |||||||| ||||||| |
|
|
| T |
11387758 |
atcatgccatactccaccacaacacacaaacagaaaataaaacacgc |
11387804 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 46742815 - 46742669
Alignment:
| Q |
23 |
aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa |
122 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||| ||| |||| ||||| || |||| |||||||||||||||||||||| ||| ||| ||||||| |
|
|
| T |
46742815 |
aagtcggactcttctctccaccaatccaccaaaacagcatcgtcgccaccattgtaaaatcaccacgtcatcaccaccttcaccttacatcaccgccaaa |
46742716 |
T |
 |
| Q |
123 |
atcgtgccctactacaccacaacacaccaatagaaaatagaacacgc |
169 |
Q |
| |
|
| || |||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
46742715 |
actatgacctactccaccacaacacaccaacagaaaatagaacacgc |
46742669 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 270547 - 270676
Alignment:
| Q |
23 |
aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa |
122 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
270547 |
aagtcagactcttctctccaccgatccaccaaaacagtatcgtcgacaccactgcaaaaccaccacgtcatcaccaccttcaccttctatcatcgccaaa |
270646 |
T |
 |
| Q |
123 |
atcgtgccctactacaccacaacacaccaa |
152 |
Q |
| |
|
| ||||||||||| ||||||||||| |||| |
|
|
| T |
270647 |
accgtgccctactccaccacaacacgccaa |
270676 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 38499409 - 38499555
Alignment:
| Q |
23 |
aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa |
122 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| || |||||| ||||| ||| ||||||| |
|
|
| T |
38499409 |
aagtcagactcttctctccaccgatccaccaaaacaacatcgtcgacagcactacaaaaccaccacgtcatcgccgccttcaccttctatcatcgccaaa |
38499508 |
T |
 |
| Q |
123 |
atcgtgccctactacaccacaacacaccaatagaaaatagaacacgc |
169 |
Q |
| |
|
| ||||||||||| ||| |||||||||||| | |||||| ||||||| |
|
|
| T |
38499509 |
accgtgccctactccactacaacacaccaacaaaaaataaaacacgc |
38499555 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 10182276 - 10182419
Alignment:
| Q |
23 |
aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa |
122 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||||||||||| || || ||| ||||||| |
|
|
| T |
10182276 |
aagtcggactcttctctccaccgatccaccaaaa-agcatcgtcgccaccactgcaaaaccaccacgtcatcaccaccttcacctcctatcaccgccaaa |
10182374 |
T |
 |
| Q |
123 |
atcgtgccctactacaccacaacacaccaatagaaaatagaacac |
167 |
Q |
| |
|
| |||| |||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
10182375 |
accgtgacctactccaccacaacacaccaacagaaaatagaacac |
10182419 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 1533485 - 1533631
Alignment:
| Q |
23 |
aagtcagactcatctctccaccgatccaccaaaacaacattgtcgacaccactgcaaaaccaccacgtcatcaccaccttcatcttctgtcaacgccaaa |
122 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||| ||| ||| ||||||| |
|
|
| T |
1533485 |
aagtcggactcttctctccaccgatccaccaaaacagcatcgtcgccaccactgtaaaaccaccacgtcatcaccaccttcaccttacatcaccgccaaa |
1533584 |
T |
 |
| Q |
123 |
atcgtgccctactacaccacaacacaccaatagaaaatagaacacgc |
169 |
Q |
| |
|
| || |||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
1533585 |
actatgacctactccaccacaacacaccaacagaaaatagaacacgc |
1533631 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 519 - 620
Target Start/End: Complemental strand, 15897140 - 15897039
Alignment:
| Q |
519 |
aagatggattgtcttactgaattgggaaaggaagctgtcacaaaattgggagaattggttgtggagtcaaccatgaagcatttcaaatatttgacacaac |
618 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
15897140 |
aagatggattgccttactgaattgggaaaagaagctgtcacaaaattgggacaattggttgtggagttatccatgaagcattttaaatatttgacacaac |
15897041 |
T |
 |
| Q |
619 |
ac |
620 |
Q |
| |
|
|| |
|
|
| T |
15897040 |
ac |
15897039 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University