View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15346_low_3 (Length: 546)
Name: NF15346_low_3
Description: NF15346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15346_low_3 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 239 - 542
Target Start/End: Complemental strand, 770243 - 769923
Alignment:
| Q |
239 |
gtaaggaagtaacgcacaaagtttcattagttctcagtacaatacgcacgtacagttgcttata-----------------tacataatactatataaat |
321 |
Q |
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| T |
770243 |
gtaaggaagtaacgcacaaagtttcattagttctcagtacaatacgcacatacagttgcttataatacagacatgcttatatacataatactatataaat |
770144 |
T |
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| Q |
322 |
tgttcaaaacatgaaacacaaatttatcaaatccttataatatagaacataaacatcatgtcatgctccaatatctcataagatttattctgacttttat |
421 |
Q |
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| T |
770143 |
tgttcaaaacatgaaacacaaatttatcaaatccttacaatatagaacatacacatcatgtcatgctccaatatctcataagatatattctgacttttat |
770044 |
T |
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| Q |
422 |
aacaacaacttatttgcaaaatatgtcaaacaattcaaattgttttagtaacagcaaaaagcaaaagaaatcttcaatgtcatctccaaacattatactt |
521 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
770043 |
aacaacaacttatttgcaaaatatgtcaaacagttcaaattgttttagtaacagcaaaaagcaaaagaaatcttcaatgtcatctccaaacattatactt |
769944 |
T |
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| Q |
522 |
cctacaaatagcttatgtaca |
542 |
Q |
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| T |
769943 |
cctacaaatagcctatgtaca |
769923 |
T |
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Target: scaffold0014 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 33072 - 33003
Alignment:
| Q |
177 |
tgaaatctccataccttaattcctaataggcccaaacaacccaatgtcaactttaattatgtgtaaggaa |
246 |
Q |
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| T |
33072 |
tgaaatctccataccttaattcctaataggcccaaacaacccaatgtcaactttagttctgtgtaaggaa |
33003 |
T |
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