View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15346_low_4 (Length: 494)
Name: NF15346_low_4
Description: NF15346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15346_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 5716874 - 5716390
Alignment:
| Q |
1 |
attgttgtaaaaaatgctctctgtagctacttgccttagaattgttatgcaagagaagactgaatctttgtggatatacatctattgatttctatatatt |
100 |
Q |
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| T |
5716874 |
attgttgtaaaaaatgctctctgtagctacttgccttagaattgttatgcaagagaagactgaatctttgtggatatacatctattgatttctatatatt |
5716775 |
T |
|
| Q |
101 |
tcccatacctttacaaatgcctaaatgtcccaaaacaaaaaattgttcatattggcaagtattatgaaagctaattgtttcacaaagaatttcatccata |
200 |
Q |
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| T |
5716774 |
tcccatacctttacaaatgcctaaatgtcccaaaacaaaaaattgttcatattggcaagtattatgaaagctaattgtttcacaaagaatttcatccata |
5716675 |
T |
|
| Q |
201 |
ataaactcggagctgacaaatttcctgtagttttcttcgttattataacacatggcatattaaatatgtataatcttatcctgcttccacggacttgtgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5716674 |
ataaactcggagctgacaaatttcctgtagttttcttcgttattataacacatggcatattaaatatgtataatcttatcctgcttccacggacttgtgt |
5716575 |
T |
|
| Q |
301 |
cgtaacatgcatatggaacttgcattgcacgtcgacctgtttatctgcctatatattggagtctttatttttcttcgcgtcatatgattttgttattgct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5716574 |
cgtaacatgcatatggaacttgcattgcacgtcgacctgtttatctgcctatatattggagtctttatttttcttcacgtcatatgattttgttattgct |
5716475 |
T |
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| Q |
401 |
ccatgtgatctttagttatctattttaggcattgtttgcttttactttgactacattgaatggatttcttaactaatagaataat |
485 |
Q |
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| T |
5716474 |
ccatgtgatctttagttatctattttaggcattgtttgcttttactttgactacattgaatggatttcttaactaatagaataat |
5716390 |
T |
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