View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15346_low_5 (Length: 489)
Name: NF15346_low_5
Description: NF15346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15346_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 15 - 471
Target Start/End: Complemental strand, 49074913 - 49074456
Alignment:
| Q |
15 |
caaaggcgatactagaattgtggatgcaggcattggtttggaagactacttgattaggaagatacgagccaagtcaaggcaattttaaacgtttgtcgga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49074913 |
caaaggcgatactagaattgtggatgcaggcattggtttggaagactacttgattaggaagatacgagccaagtcaaggcaattttaaacgtttgtcgga |
49074814 |
T |
|
| Q |
115 |
cttgcagcttacaagcatacttttgtt-acaggtgagaatatcattttgttgcctgcagcctgtattaggtcaagttacttcttgtatatacatgattgt |
213 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49074813 |
cttgcagcttacaagcatacttttttttacaggtgagaatatcattttgttgcctgcagcctgtattaggtcaagttacttcttgtatatacatgattgt |
49074714 |
T |
|
| Q |
214 |
gttttatgattgaaatgttgaccatgtgacaagtacactcttgtttagttattttccaaattgagtactctacataagattgccacataactatttttgc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
49074713 |
gttttatgattgaaatgttgaccatgtgacaagtacactcttgtttagttattttccaaattgtgtactctacataagattgccacataactatttttgc |
49074614 |
T |
|
| Q |
314 |
caaagaaaattatacacgttcctctagtaaagataattttcgatgatagtgtttcatgtgtctttcataattacgcagcttgtccgtagctataatgtat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
49074613 |
caaagaaaattatacacgttcctctagtaaagatgattttcaatgatagtgtttcatgtgtctttcatgattatgcagcttgtccgtagctataatgtat |
49074514 |
T |
|
| Q |
414 |
tgttttctgactccagtttaaaagagctcatgcttatgtttgaaccaattcatcaagg |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49074513 |
tgttttctgactccagtttaaaagagctcatgcttatgtttgaaccaattcatcaagg |
49074456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University