View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15346_low_6 (Length: 464)
Name: NF15346_low_6
Description: NF15346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15346_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Complemental strand, 6998784 - 6998348
Alignment:
| Q |
19 |
acacgtatctattaatcatctaatttacacaattaacaaattatttaaattgtgttaaccactgaaaagttatcgcaaatgatatctaactttagttgta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6998784 |
acacgtatctattaatcatctaatttacacaattaacaaattatttaaattgtgttaaccactgaaaagttatcgcaaatgatatctaactttagttgta |
6998685 |
T |
|
| Q |
119 |
caaataatttctcttatctatttatcgttatctttctctactcttgaattttctcacaaaagaaacacattcttttgataaattggcacaaaaaggcaaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6998684 |
caaataatttctcttatctatttatcgttatctttctctactcttgaattttctcac-aaagaaacacattattttgataaattggcacaaaaaggcaaa |
6998586 |
T |
|
| Q |
219 |
aataaaggggagggagttgctatcagtacacgttggattgtgagaaggatgttgccatatcaatattttaaggtgaactcaatgatatattcatgtagtt |
318 |
Q |
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| T |
6998585 |
aataaaggggagggagttgctatcagtccacgttggattgtgagaaggatgttgccatatcaatattttaaggtgaactcaatg--atattcacgtagtt |
6998488 |
T |
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| Q |
319 |
tgttcgggtatgtaactttcatgttattaatcaatgacatgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaattttgcata |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
6998487 |
tgttcgggtatgtaactttcatgttattaatcaatgacatgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaactttgctta |
6998388 |
T |
|
| Q |
419 |
gtatcactaccaatcaaactccaactccaagatacctatg |
458 |
Q |
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| T |
6998387 |
gtatcactaccaatcaaactccaactccaagatacctatg |
6998348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 412
Target Start/End: Original strand, 4626723 - 4626785
Alignment:
| Q |
350 |
caatgacatgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaattt |
412 |
Q |
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| T |
4626723 |
caatgacatgtcatatttttacattaatttattttaaaataagtttaaatgttaaacaaattt |
4626785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 37492660 - 37492722
Alignment:
| Q |
351 |
aatgacatgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaatttt |
413 |
Q |
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| T |
37492660 |
aatgtcatgtcatatttttacattaatttattttaaaataaatttaaatgttaaacaaatttt |
37492722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 411
Target Start/End: Complemental strand, 4693016 - 4692949
Alignment:
| Q |
344 |
attaatcaatgacatgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaatt |
411 |
Q |
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| T |
4693016 |
attattcaatgacatgtcatatttgcatcttaatttattttaaaataaatttaaatgttaaacaaatt |
4692949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 39489736 - 39489669
Alignment:
| Q |
347 |
aatcaatgacatgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaattttgc |
415 |
Q |
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| T |
39489736 |
aatcaatatcatgtcatatttt-atattaatttattttaaaataaattcaaatattaaataaattttgc |
39489669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 35120197 - 35120156
Alignment:
| Q |
372 |
attaatttattctaaaatagatttaaatgttaaataaatttt |
413 |
Q |
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| T |
35120197 |
attaatttattttaaaataaatttaaatgttaaataaatttt |
35120156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 414
Target Start/End: Original strand, 34430449 - 34430514
Alignment:
| Q |
349 |
tcaatgacatgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaattttg |
414 |
Q |
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| T |
34430449 |
tcaatgtcatgtcatatttttatattaatttatattaaaataaatttaaatgttaaacaaattttg |
34430514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 11443890 - 11443847
Alignment:
| Q |
372 |
attaatttattctaaaatagatttaaatgttaaataaattttgc |
415 |
Q |
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| T |
11443890 |
attaatttattttaaaataaatttaaatgttaaacaaattttgc |
11443847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 513924 - 513981
Alignment:
| Q |
357 |
atgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaattttg |
414 |
Q |
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| T |
513924 |
atgtcatatttttatattaatttattttaaaataaatttaaatgttacacaaattttg |
513981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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