View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15346_low_8 (Length: 377)
Name: NF15346_low_8
Description: NF15346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15346_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 38180018 - 38180380
Alignment:
| Q |
1 |
tggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtt |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180018 |
tggtccgattggtatcattttgatcttaccaacgtcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtt |
38180117 |
T |
|
| Q |
101 |
tcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagag |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38180118 |
tcttcatatagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacggctttcaagag |
38180217 |
T |
|
| Q |
201 |
agaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180218 |
agaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgacgtagtcaccatgctcatgaaagtaataatagtagatatcaaa |
38180317 |
T |
|
| Q |
301 |
aaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
363 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180318 |
aactgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
38180380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 38184687 - 38185049
Alignment:
| Q |
1 |
tggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38184687 |
tggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactgtagggttggtt |
38184786 |
T |
|
| Q |
101 |
tcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38184787 |
tcttcatctagaacttgaatttgttctttgaaagatcgagtagcgatagtatatatatttgaagataataaaaaagagggaaggtcacggctttcaagag |
38184886 |
T |
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| Q |
201 |
agaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38184887 |
agaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgttcatgaaagtaataatagtagatatcaaa |
38184986 |
T |
|
| Q |
301 |
aaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38184987 |
aaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
38185049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 2 - 360
Target Start/End: Original strand, 38170205 - 38170563
Alignment:
| Q |
2 |
ggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggttt |
101 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| || ||||| || | ||||||||| ||||||||||| ||||||||| | |||||| ||| |
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| T |
38170205 |
ggtccgatgggtatcattttgatcttaccaacatcaactttattcagtgcatccagttcaaactcctcaacggtgttcacaagtactcttgggttgattt |
38170304 |
T |
|
| Q |
102 |
cttcat-ctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagag |
200 |
Q |
| |
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|||||| | | |||| ||||||| ||||||| |||| || ||| | ||||||| ||||||||| |||||||||||||||||||| || |||| ||||| |
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| T |
38170305 |
cttcattcaacaact-gaatttgctctttgagagatggaagagcaaaagtgtatgtatttgaagccaataaaaaagagggaaggtcgcggcttttaagag |
38170403 |
T |
|
| Q |
201 |
agaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaa |
300 |
Q |
| |
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||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | |||||||| |
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| T |
38170404 |
agaatgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgtgatgtagtcaccgtgttcatgaaagtaataatagaatatatcaaa |
38170503 |
T |
|
| Q |
301 |
aaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctt |
360 |
Q |
| |
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|||||||| ||||||||||| || || | ||||||||||||||||||| |||||||||| |
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|
| T |
38170504 |
caccgttgctgcttgaatccacaacagtgttgatgggaggtgaagctcatgtgccacctt |
38170563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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