View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15347_high_1 (Length: 583)
Name: NF15347_high_1
Description: NF15347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15347_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 17 - 574
Target Start/End: Original strand, 15568759 - 15569305
Alignment:
| Q |
17 |
atctttcgtaagtatttattgagctgtttttcccatcatcattatgacaaaataaaaataataatttggagacaatggcaataagaccaatcaaaagaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15568759 |
atctttcgtaagtatttattgagctgtttttcccatcatcattatgacaaaataaaaataataatttggagacaatggcaataagaccaatcaaaagaag |
15568858 |
T |
|
| Q |
117 |
ggtccttcattggaccgactagctatatatattttatataacacgctagtggatgattaattatcctaaacaaaattcatttttcagtcaagnnnnnnnn |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15568859 |
ggtccttcattggaccgactagctatatatattttatataacacgctagtggatgattaattatcctaaacaaaattcatttttcagtcaagaaaaaaaa |
15568958 |
T |
|
| Q |
217 |
caaatttggtttttattttattataatatgaaaatggtctagaatgataacgtgggacaaaatccatataaaattgtgactaaaattggaaagcaactta |
316 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15568959 |
cacatttggtttttattttattataatatgaaaatggtctagaatgataacgtgggacaaaatctatataaaattgtgactaaaattggaaagcaactta |
15569058 |
T |
|
| Q |
317 |
atggatttatttcaaagaaaaacataaaaccacccatcctaactttttaaatgatagtataaaagtatcaattgaagggaaactgctcttccaaattcca |
416 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15569059 |
atggatttatttcaaagcaaaacataaaaccatccat-ctaactttttaaatga---tataaaagtatcaattgaagggaaactgctc-------ttcca |
15569147 |
T |
|
| Q |
417 |
atagataataaatgtttattcccccttnnnnnnnntctatattcccttaataggattcaaaccctagtcatatggttaaagggttcaaactactatattg |
516 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15569148 |
atagataataaatatttattccccctttaaaaaaatctctattcccttaataggattcaaaccctagtcatatggttaaagggttcaaactactatattg |
15569247 |
T |
|
| Q |
517 |
ctaaccacttgaacccaccttgtttggccctaattctaatcttagctaccagaataat |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15569248 |
ctaaccacttgaacccaccttgtttggccctaattctaatcttagctatcagaataat |
15569305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University