View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15347_high_12 (Length: 238)
Name: NF15347_high_12
Description: NF15347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15347_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28707925 - 28708146
Alignment:
| Q |
1 |
tgcatccaacttttggaacataattttcttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaattaatcagttgacctgaagctgat |
100 |
Q |
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| T |
28707925 |
tgcatccaacttttggaacataattttcttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaattaatcagttgacctgaagctgat |
28708024 |
T |
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| Q |
101 |
tgatataagtctaggattttattcaccgtctatgcatcctgtaaagagtccctacgaaatatgagactgtcatcaacaaagaaaagatgactaatatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28708025 |
tgatataagtctaggattttattcaccgtctatgcatcctgtaaagagtccctacgaaatatgagactgtcatcaacaaagaaaagatgactaatatttg |
28708124 |
T |
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| Q |
201 |
gtgatcctctcactatacttag |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
28708125 |
gtgatcctctcactatacttag |
28708146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 9668685 - 9668744
Alignment:
| Q |
17 |
aacataattttcttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaa |
76 |
Q |
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| T |
9668685 |
aacaaaattttcttctcttcaaaaacatttcggctaaaggaaatttccgacttgtccaaa |
9668744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 48815355 - 48815454
Alignment:
| Q |
29 |
ttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaattaatcagttgacctgaagctgattgatataagtctaggattttattcaccg |
128 |
Q |
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| T |
48815355 |
ttctcttcagtaacatttcggctaaaggaaatttctgaattgtccagattaatcggttggtctgaagctaactggtatagatctaggattttattcaccg |
48815454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 729641 - 729725
Alignment:
| Q |
12 |
tttggaacataattttcttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaattaatcagttgacctgaagc |
96 |
Q |
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||||||||| |||||| | || || ||||||||||| || || || |||||||||||||||||||| || |||||||| ||||| |
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| T |
729641 |
tttggaacacaattttatgatcatcgggtacatttcaacttaaagagatttctgatttgtccaaattgataagttgaccagaagc |
729725 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 20780364 - 20780303
Alignment:
| Q |
44 |
tttcagctaaaggaaatttctgatttgtccaaattaatcagttgacctgaagctgattgata |
105 |
Q |
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| T |
20780364 |
tttcggctaaatgaaatttctgatttctccaagttaatgagttggcctgaggctgcttgata |
20780303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 26888479 - 26888564
Alignment:
| Q |
13 |
ttggaacataattttcttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaattaatcagttgacctgaagctg |
98 |
Q |
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| T |
26888479 |
ttggaacatgatttttttctcttcaagaacatttcagctaaaggagatttcagacttgtataagttgatgagttgaccggaagctg |
26888564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 11793664 - 11793719
Alignment:
| Q |
35 |
tcaggtacatttcagctaaaggaaatttctgatttgtccaaattaatcagttgacc |
90 |
Q |
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||||||||||||| |||||| | |||||||||||||| |||||||| |||||||| |
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| T |
11793664 |
tcaggtacatttcggctaaaacagatttctgatttgtcaaaattaataagttgacc |
11793719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 11804454 - 11804386
Alignment:
| Q |
13 |
ttggaacataattttcttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaattaat |
81 |
Q |
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||||||||| ||||| ||||||| | || ||||||||||| |||||||||||||| ||||| ||||| |
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| T |
11804454 |
ttggaacatgatttttctctcttctgaaacgtttcagctaaatgaaatttctgatttctccaagttaat |
11804386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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