View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15347_high_4 (Length: 418)

Name: NF15347_high_4
Description: NF15347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15347_high_4
NF15347_high_4
[»] chr7 (10 HSPs)
chr7 (15-403)||(42175683-42176071)
chr7 (15-402)||(42144564-42144951)
chr7 (15-402)||(42156511-42156898)
chr7 (15-403)||(42135431-42135819)
chr7 (224-270)||(39577320-39577366)
chr7 (332-381)||(39334936-39334985)
chr7 (332-381)||(39346194-39346243)
chr7 (332-381)||(39360745-39360794)
chr7 (332-381)||(39541570-39541619)
chr7 (337-381)||(39577433-39577477)
[»] chr4 (3 HSPs)
chr4 (182-267)||(2900557-2900642)
chr4 (182-270)||(2874325-2874413)
chr4 (136-237)||(34144416-34144516)
[»] chr1 (2 HSPs)
chr1 (194-276)||(41690493-41690575)
chr1 (109-213)||(2163683-2163787)


Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 42175683 - 42176071
Alignment:
Q  15 atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42175683 atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc 42175782  T
Q  115 ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42175783 ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga 42175882  T
Q  215 ccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaaccattt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42175883 ccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaaccattt 42175982  T
Q  315 gtctcatgaacttgcatatttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaagagtacttttgctggtcctacc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42175983 gtctcatgaacttgcatatttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaagagtacttttgctggtcctacc 42176071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 402
Target Start/End: Original strand, 42144564 - 42144951
Alignment:
Q  15 atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc 114  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  42144564 atgaatgaaagaaatcaacaaattcaggaactgaaacatatctataaggttcatctcttttaaaccagtattgttgttgatctttcttggatgttacttc 42144663  T
Q  115 ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga 214  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42144664 ttgtaagaaatcagcaacaccttttctctctggacacctaaagcctgtgtattcgaagaactctagcacattttcacgcggaccttgatatactatttga 42144763  T
Q  215 ccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaaccattt 314  Q
    ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||| ||  |||||| |||||| ||| ||||||| ||    
T  42144764 ccttctgaaagaagaataatgtcgtcaaagaggtcaaatgtctctggtgctggctgtaaaagcgaaacgatgacggttgcatccagtatatgaaccactt 42144863  T
Q  315 gtctcatgaacttgcatatttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaagagtacttttgctggtcctac 402  Q
    |||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| |||||| ||| ||||||||||||    
T  42144864 gtctcacgaacttgcatatttgaaaagtggttgaactatccaatcccgttgatatttcatccataaagagtgcttgtgctggtcctac 42144951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 15 - 402
Target Start/End: Original strand, 42156511 - 42156898
Alignment:
Q  15 atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc 114  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||    
T  42156511 atgaatgaaagaaatcaacaaattcaggaactgaaacatatctataaggttcatctattttaaaccagtattgttgttgatctttcttggatgttacttc 42156610  T
Q  115 ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga 214  Q
    |||||||||||||||||  | ||||||||| || |||||||| || |||||||| ||||||||||| || || ||||| || ||||||||||||||||||    
T  42156611 ttgtaagaaatcagcaatcccttttctctcaggacacctaaaacctgtgtattcaaagaactctagtacgttctcacgtggtccttgatatacaatttga 42156710  T
Q  215 ccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaaccattt 314  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  42156711 ccttctgaaagtagaataatgtcgtcaaagagttcaaatgtctctggtgctggctgtaaaagagaaatgactacggttacatccattatatgaaccattt 42156810  T
Q  315 gtctcatgaacttgcatatttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaagagtacttttgctggtcctac 402  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| |||||    
T  42156811 gtctcatgaacttgcatatttgaaaagtggttgaactatccaatcctgttgatatttcatccataaagagtgcttgtgctggccctac 42156898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 42135431 - 42135819
Alignment:
Q  15 atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc 114  Q
    |||||| |||| | |||| |||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  42135431 atgaatcaaaggaatcaacaaattcagaaactgaaacatatttataaggtttatctcttctaaaccaatattgttgttggtcttttttggatgttacttc 42135530  T
Q  115 ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga 214  Q
    |||||| |||||||| || | ||||||    || ||  | || ||  ||  ||| || |||| || ||||||||| || || ||||| ||||||||||||    
T  42135531 ttgtaaaaaatcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactgtaacacattttcgcgtggtccttggtatacaatttga 42135630  T
Q  215 ccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaaccattt 314  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||| ||| ||||| || |  |||||||| | ||||||||||||||    
T  42135631 ccttctgaaagtaggataatgtcatcaaagagttcaaatgtctctggtgctggttgtagaagagaaatcaccattgttacatctaatatgtgaaccattt 42135730  T
Q  315 gtctcatgaacttgcatatttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaagagtacttttgctggtcctacc 403  Q
    || |||||||||||  ||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  42135731 gtttcatgaacttggttatttgaaaagtggttgaactatctaatcctgttgatatttcatccatgaacagtacttttgctggtcctacc 42135819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 39577320 - 39577366
Alignment:
Q  224 agtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctg 270  Q
    ||||||||||||||||||||||| ||| | |||||||||| ||||||    
T  39577320 agtagaataatgtcgtcaaaaagatcataagtctctggtggtggctg 39577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 39334985 - 39334936
Alignment:
Q  332 atttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaa 381  Q
    |||| |||||| |||||||||||||| || || |||||||||||||||||    
T  39334985 atttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 39334936  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 39346243 - 39346194
Alignment:
Q  332 atttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaa 381  Q
    |||| |||||| |||||||||||||| || || |||||||||||||||||    
T  39346243 atttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 39346194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 39360794 - 39360745
Alignment:
Q  332 atttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaa 381  Q
    |||| |||||| |||||||||||||| || || |||||||||||||||||    
T  39360794 atttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 39360745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 39541570 - 39541619
Alignment:
Q  332 atttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaa 381  Q
    |||| |||||| |||||||||||||| || || |||||||||||||||||    
T  39541570 atttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 39541619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 39577433 - 39577477
Alignment:
Q  337 aaaagtggttgagctatccaatcctgttgatatttcatccatgaa 381  Q
    |||||| |||||||||||||| || || |||||||||||||||||    
T  39577433 aaaagttgttgagctatccaaaccagtagatatttcatccatgaa 39577477  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 2900557 - 2900642
Alignment:
Q  182 acattttcacgcggaccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctgg 267  Q
    |||| ||||||||| |||||||| ||||||||||| || || |  ||||||||||| |||||||||||| | ||||||||||||||    
T  2900557 acatgttcacgcggtccttgatagacaatttgaccatcggatataagaataatgtcatcaaaaagttcataagtctctggtgctgg 2900642  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 270
Target Start/End: Complemental strand, 2874413 - 2874325
Alignment:
Q  182 acattttcacgcggaccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctg 270  Q
    ||||||||||| || ||||| || ||||||| ||| || || |  ||||||||||| |||||||||||| | |||||||||||||||||    
T  2874413 acattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctg 2874325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 34144416 - 34144516
Alignment:
Q  136 ttttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttgaccttctgaaagtagaataatg 235  Q
    ||||||||| || || ||||| ||  ||||||| |||||||  |||||||||||| | ||||||||  ||||||||||| ||||| ||||||| ||||||    
T  34144416 ttttctctcgggacatctaaaacctatgtattcaaagaactgaagcacattttcatgtggaccttggaatacaatttgagcttct-aaagtaggataatg 34144514  T
Q  236 tc 237  Q
    ||    
T  34144515 tc 34144516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 41690493 - 41690575
Alignment:
Q  194 ggaccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaag 276  Q
    |||||||| || ||||| ||||||||||||||||  || ||||| |||||||| |||||||| |||||||| || ||||||||    
T  41690493 ggaccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaagatcaaatgtttctggtgcaggttgtaaaag 41690575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 2163683 - 2163787
Alignment:
Q  109 tacttcttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatataca 208  Q
    |||||||||||||||||||||||| | |||||| || || ||| | || ||| |  | ||||| |||||||| |||||||| |  || |||||||| |||    
T  2163683 tacttcttgtaagaaatcagcaactccttttctttcaggacacttgaatcccattgactcgaaaaactctagtacattttctcttggtccttgatacaca 2163782  T
Q  209 atttg 213  Q
    |||||    
T  2163783 atttg 2163787  T

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