View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15347_high_6 (Length: 360)

Name: NF15347_high_6
Description: NF15347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15347_high_6
NF15347_high_6
[»] chr6 (7 HSPs)
chr6 (18-345)||(33575816-33576143)
chr6 (229-303)||(33568841-33568915)
chr6 (24-171)||(5978679-5978826)
chr6 (217-279)||(19746857-19746919)
chr6 (24-93)||(33568636-33568705)
chr6 (231-347)||(34861966-34862082)
chr6 (63-109)||(19747033-19747079)
[»] chr3 (3 HSPs)
chr3 (18-347)||(36339761-36340090)
chr3 (216-292)||(25901429-25901505)
chr3 (216-292)||(25915447-25915523)
[»] scaffold0707 (2 HSPs)
scaffold0707 (229-303)||(5235-5309)
scaffold0707 (24-93)||(5030-5099)
[»] chr1 (2 HSPs)
chr1 (37-87)||(17954036-17954086)
chr1 (49-96)||(39379422-39379469)
[»] chr7 (7 HSPs)
chr7 (217-266)||(26237459-26237508)
chr7 (37-87)||(24035416-24035466)
chr7 (48-106)||(26237278-26237336)
chr7 (229-266)||(24016646-24016683)
chr7 (48-93)||(26229881-26229926)
chr7 (217-266)||(26256620-26256669)
chr7 (49-93)||(24391079-24391123)
[»] chr2 (1 HSPs)
chr2 (219-267)||(25376921-25376969)
[»] chr4 (2 HSPs)
chr4 (49-97)||(3557388-3557436)
chr4 (216-292)||(10571426-10571502)


Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 33575816 - 33576143
Alignment:
Q  18 agaacaaaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaa 117  Q
    |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33575816 agaacaaaagtttatggagaagcaaggttaaagttttcaattcgggtgataattgttggagaaatattcgaagtttccctttcgttcctattttgggaaa 33575915  T
Q  118 tgatggtgtatattgtagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcct 217  Q
    |||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575916 tgatggtgttcattttagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcct 33576015  T
Q  218 gttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccat 317  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33576016 gttgagaaatgtgtgattgtttcgcttgatcttttgacagagacatacacacaatttttgcttcctacgggttttaaggagctgccttatgataagccat 33576115  T
Q  318 cagttcgagttctgatggactgcctttg 345  Q
    ||||||||||||||||||||||||||||    
T  33576116 cagttcgagttctgatggactgcctttg 33576143  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 33568841 - 33568915
Alignment:
Q  229 tgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgcc 303  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  33568841 tgtgattgtttcccttgatctttcgccggagacatacacacaatttttgcttcctaagggttttaatgaggtgcc 33568915  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 5978679 - 5978826
Alignment:
Q  24 aaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaatgatgg 123  Q
    ||||||||||||||||||||||    ||||||| ||||||||||  |||||||||| | ||||||||||| ||||| |||||| || | || ||||||||    
T  5978679 aaggtttatggagaagcaaggtgagggttttcagtttgggtgatttttgttggagagagattcaaagttttcctttggttcctcttatcgggaatgatgg 5978778  T
Q  124 tgtatattgtagtggaactattaactggttagctattcacagtgacta 171  Q
    |||  |||  ||||||||  |||| ||| ||||||||||| |||||||    
T  5978779 tgtgcatttgagtggaacggttaattggctagctattcacggtgacta 5978826  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 19746919 - 19746857
Alignment:
Q  217 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgct 279  Q
    ||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  19746919 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 19746857  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 33568636 - 33568705
Alignment:
Q  24 aaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagttt 93  Q
    |||||||||||||||   ||||   |||||||| ||||||||||| ||||||||||||||||||||||||    
T  33568636 aaggtttatggagaaatgaggtgcgagttttcagtttgggtgatagttgttggagaaatattcaaagttt 33568705  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 347
Target Start/End: Complemental strand, 34862082 - 34861966
Alignment:
Q  231 tgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagttcgagttct 330  Q
    |||||| ||||||||||||||| || |||||||||| | | || |||||||| ||||||||||| ||| |||| | || | ||||||   |||| |||||    
T  34862082 tgattgcttcgcttgatctttccaccgagacatacaaatatttgttgcttcccaagggttttaaagagttgccatgtgctgagccatatcttcgggttct 34861983  T
Q  331 gatggactgcctttgct 347  Q
    | |||| ||||||||||    
T  34861982 gttggattgcctttgct 34861966  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 19747079 - 19747033
Alignment:
Q  63 gtgataattgttggagaaatattcaaagtttccctttcgttcctatt 109  Q
    ||||||||||||||||||||||| | |||||||||||  ||||||||    
T  19747079 gtgataattgttggagaaatattgagagtttccctttgattcctatt 19747033  T

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Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 36339761 - 36340090
Alignment:
Q  18 agaacaaaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaa 117  Q
    ||||| || |||||||||||||||||||   |||||| | ||| |||||||||||||||||| ||||||||||||||||||| |||||| || |  | ||    
T  36339761 agaacgaaagtttatggagaagcaaggtggcagtttttagttttggtgataattgttggagatatattcaaagtttccctttggttcctcttatatggaa 36339860  T
Q  118 tgatggtgtatattgtagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcct 217  Q
    |||||||||  |||  |||||| ||||||||||||| ||| ||    | |||| || | |||||||   ||||| ||||  |||| ||  ||||  || |    
T  36339861 tgatggtgtgcatttgagtggagctattaactggttggctctttctggcgacttcgtatcaattgattgtggagaaacaagtaaagcttatattcctctt 36339960  T
Q  218 gttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccat 317  Q
    |||||| |||  |||||||||||||||||||||||||| ||||||||||  || ||||||||||||   |||||||||||| |||| |  | | ||||||    
T  36339961 gttgagcaattggtgattgtttcgcttgatctttcgacggagacatacaggcagtttttgcttcctgcaggttttaaggaggtgccatgcgttgagccat 36340060  T
Q  318 cagttcgagttctgatggactgcctttgct 347  Q
    |  |||| ||||||||||||||||||||||    
T  36340061 ctcttcgggttctgatggactgcctttgct 36340090  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 25901505 - 25901429
Alignment:
Q  216 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggtttt 292  Q
    |||||||| ||| ||||||||||||||||||||| || || ||| ||||||| || || ||||| |||  |||||||    
T  25901505 ctgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggtttt 25901429  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 25915523 - 25915447
Alignment:
Q  216 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggtttt 292  Q
    |||||||| ||| ||||||||||||||||||||| || || ||| ||||||| || || ||||| |||  |||||||    
T  25915523 ctgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctgcctcggggtttt 25915447  T

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Target: scaffold0707 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 5235 - 5309
Alignment:
Q  229 tgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgcc 303  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  5235 tgtgattgtttcccttgatctttcgccggagacatacacacaatttttgcttcctaagggttttaatgaggtgcc 5309  T

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Target: scaffold0707; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 5030 - 5099
Alignment:
Q  24 aaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagttt 93  Q
    |||||||||||||||   ||||   |||||||| ||||||||||| ||||||||||||||||||||||||    
T  5030 aaggtttatggagaaatgaggtgcgagttttcagtttgggtgatagttgttggagaaatattcaaagttt 5099  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 17954086 - 17954036
Alignment:
Q  37 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 87  Q
    |||| ||||| |||||| || ||||||||||||||||||||||||||||||    
T  17954086 aagcgaggttaaagtttacagtttgggtgataattgttggagaaatattca 17954036  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 39379469 - 39379422
Alignment:
Q  49 agttttcaatttgggtgataattgttggagaaatattcaaagtttccc 96  Q
    |||||||| |||||||||||||  ||||||||||||| ||||||||||    
T  39379469 agttttcagtttgggtgataatgtttggagaaatattgaaagtttccc 39379422  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 26237459 - 26237508
Alignment:
Q  217 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacataca 266  Q
    ||||||| ||| ||||||| |||||||||||||||||||| |||||||||    
T  26237459 tgttgagcaatttgtgattctttcgcttgatctttcgacaaagacataca 26237508  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 24035416 - 24035466
Alignment:
Q  37 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 87  Q
    ||||| |||| || |||||||| | ||||||||||||||||||||||||||    
T  24035416 aagcagggttaaaattttcaatcttggtgataattgttggagaaatattca 24035466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 26237278 - 26237336
Alignment:
Q  48 aagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcct 106  Q
    ||||||| | |||||||| ||| ||||||||||||||||||||||| ||  ||||||||    
T  26237278 aagtttttagtttgggtgttaactgttggagaaatattcaaagttttccggtcgttcct 26237336  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 24016646 - 24016683
Alignment:
Q  229 tgtgattgtttcgcttgatctttcgacagagacataca 266  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  24016646 tgtgattgtttctcttgatctttcgacggagacataca 24016683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 26229881 - 26229926
Alignment:
Q  48 aagttttcaatttgggtgataattgttggagaaatattcaaagttt 93  Q
    ||||||| | |||||||| ||| |||||||||||||||||||||||    
T  26229881 aagtttttagtttgggtggtaactgttggagaaatattcaaagttt 26229926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 26256620 - 26256669
Alignment:
Q  217 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacataca 266  Q
    ||||||| ||| ||||||| |||||||||||||||| || ||||||||||    
T  26256620 tgttgagcaatttgtgattatttcgcttgatctttcaacggagacataca 26256669  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 24391079 - 24391123
Alignment:
Q  49 agttttcaatttgggtgataattgttggagaaatattcaaagttt 93  Q
    |||||| | |||||||||||||  |||||||||||||||||||||    
T  24391079 agtttttagtttgggtgataatatttggagaaatattcaaagttt 24391123  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 25376921 - 25376969
Alignment:
Q  219 ttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacac 267  Q
    ||||||||| ||||||||||||||| ||||| ||||| |||||||||||    
T  25376921 ttgagaaatatgtgattgtttcgctcgatctctcgactgagacatacac 25376969  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 3557388 - 3557436
Alignment:
Q  49 agttttcaatttgggtgataattgttggagaaatattcaaagtttccct 97  Q
    |||||||| ||| |||||||||  ||||||||||||| |||||||||||    
T  3557388 agttttcagtttaggtgataatgtttggagaaatattgaaagtttccct 3557436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 10571502 - 10571426
Alignment:
Q  216 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggtttt 292  Q
    |||||||| ||| |||||||||||| |||||||| || || ||| |||||||  |||| |||||||||  |||||||    
T  10571502 ctgttgagcaatatgtgattgtttcacttgatctctcaactgagtcatacactgaattgttgcttcctcggggtttt 10571426  T

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