View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15347_low_10 (Length: 347)

Name: NF15347_low_10
Description: NF15347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15347_low_10
NF15347_low_10
[»] chr6 (3 HSPs)
chr6 (1-118)||(31900714-31900832)
chr6 (268-330)||(31925598-31925660)
chr6 (4-99)||(4739990-4740084)
[»] chr3 (2 HSPs)
chr3 (4-118)||(888542-888656)
chr3 (202-251)||(888740-888789)
[»] chr1 (3 HSPs)
chr1 (17-98)||(52937210-52937291)
chr1 (17-98)||(52944845-52944926)
chr1 (4-99)||(12603321-12603414)
[»] chr2 (1 HSPs)
chr2 (4-99)||(10453692-10453785)
[»] scaffold0238 (1 HSPs)
scaffold0238 (4-99)||(13528-13621)


Alignment Details
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 31900714 - 31900832
Alignment:
Q  1 aaagtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactccaccttgagttttgtagcaac-aatgt 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31900714 aaagtcatttaaattggtatgtacaatgtcacaatacataaaactcacattaagctgcacttgagattaactccaccttgagttttgtagcaacaaatgt 31900813  T
Q  100 ttatttcttcttcgtctgc 118  Q
    |||||||||||||||||||    
T  31900814 ttatttcttcttcgtctgc 31900832  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 31925598 - 31925660
Alignment:
Q  268 aaacaaaactgcagcaacaccaactggcacacacagaacaataaaggaaagcaatggctgaaa 330  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  31925598 aaacaaaactgcagcaacaccaactggcacacacaagacaataaaggagagcaatggctgaaa 31925660  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 4740084 - 4739990
Alignment:
Q  4 gtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactccaccttgagttttgtagcaacaatgt 99  Q
    |||||||||||  |||| ||||||||||||||| | ||||  ||||||||| ||||||||||||| ||||||||||||||| | ||||| ||||||    
T  4740084 gtcatttacatctgtatatacaatgtcacaatagaaaaaaa-cacattaagttgcacttgagatttactccaccttgagttctatagcagcaatgt 4739990  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 888542 - 888656
Alignment:
Q  4 gtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactccaccttgagttttgtagcaacaatgtttat 103  Q
    ||||||||||||||||||||||||||||| ||| ||||||  |||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |    
T  888542 gtcatttacattggtatgtacaatgtcacgatagataaaacacacattaagctgcacttgagattagctccaccttaagttttgttgcaacaatgtttct 888641  T
Q  104 ttcttcttcgtctgc 118  Q
    |||||||||||||||    
T  888642 ttcttcttcgtctgc 888656  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 888740 - 888789
Alignment:
Q  202 gcttatatagaacacagtgattgtatctagaaagttactatcctactata 251  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  888740 gcttatatagaacacagtgattgtacctacaaagttattatcctactata 888789  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 52937291 - 52937210
Alignment:
Q  17 gtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactccaccttgagttttgtagcaacaatg 98  Q
    ||||| |||||||||||| | | ||||| ||||||||||| || ||||||||| ||||||| ||||||||||||||||||||    
T  52937291 gtatgcacaatgtcacaaaagaaaaaatacacattaagcttcatttgagattagctccaccctgagttttgtagcaacaatg 52937210  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 52944926 - 52944845
Alignment:
Q  17 gtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactccaccttgagttttgtagcaacaatg 98  Q
    ||||| |||||||||||| | | ||||| ||||||||||| || ||||||||| ||||||| ||||||||||||||||||||    
T  52944926 gtatgcacaatgtcacaaaagaaaaaatacacattaagcttcatttgagattagctccaccctgagttttgtagcaacaatg 52944845  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 12603321 - 12603414
Alignment:
Q  4 gtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactccaccttgagttttgtagcaacaatgt 99  Q
    |||||||||||  |||| |||||| |||||||| | ||||  ||||||||| |||||||||||||| |||||| ||||||| | ||||| ||||||    
T  12603321 gtcatttacatctgtatatacaatttcacaatagaaaaaa--cacattaagttgcacttgagattagctccactttgagttctatagcagcaatgt 12603414  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 10453785 - 10453692
Alignment:
Q  4 gtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactccaccttgagttttgtagcaacaatgt 99  Q
    |||||||||||  |||| ||||||||||||||| | ||||  ||||||||| |||||||||||||| |||||||||||||| | ||||| ||||||    
T  10453785 gtcatttacatctgtatatacaatgtcacaatagaaaaaa--cacattaagttgcacttgagattagctccaccttgagttctatagcagcaatgt 10453692  T

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Target: scaffold0238 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 13621 - 13528
Alignment:
Q  4 gtcatttacattggtatgtacaatgtcacaatacataaaattcacattaagctgcacttgagattaactccaccttgagttttgtagcaacaatgt 99  Q
    |||||||||||  |||| | |||| |||||||| | ||||  ||||||||| |||||||||||||| |||||| ||||||| | ||||| ||||||    
T  13621 gtcatttacatctgtatattcaatttcacaatagaaaaaa--cacattaagttgcacttgagattagctccactttgagttctatagcagcaatgt 13528  T

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