View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15347_low_12 (Length: 301)
Name: NF15347_low_12
Description: NF15347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15347_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 4482425 - 4482702
Alignment:
| Q |
18 |
cataaaaaccaatgttttaaaaaccgggtccatcggtcgaaccgatccgaccgaaaaccgatggggtgacctgtatctatcattgaatagcaattaattt |
117 |
Q |
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| T |
4482425 |
cataaaaaccaatgttttaaaaaccgggtccatcggtcgaaccgatctgaccgaaaaccgatggggtgaccggtatctatcattgaatagcaattaattt |
4482524 |
T |
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| Q |
118 |
aatttttaaattgttgtgaattttatgataattgtatttaataaaaaggatgatatattagtgaattaacatttttatttaggcttacaggaacatggga |
217 |
Q |
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| T |
4482525 |
aatttttaaattgttgtgaattttatgataattgtatttaataaaaaggatgatatattagtgaattaacatttttatttaggcttacaggaacatggga |
4482624 |
T |
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| Q |
218 |
gtctcttgcatttctcttggcatcagtagcagagaagacagtgtaaacaagaacaaatgtaccaataatctctgctcc |
295 |
Q |
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| T |
4482625 |
gtctcttgcatttctcttggcatcagtagcagagaagacagtgtaaacaagaacaaatgtaccaacaatctctgctcc |
4482702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 21793903 - 21793820
Alignment:
| Q |
200 |
gcttacaggaacatgggagtctcttgcatttctcttggcatcagtagcagagaagacagtgtaaacaagaacaaatgtaccaat |
283 |
Q |
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| T |
21793903 |
gcttacaggaacatgggagtccctagcgttcctcttaggatcagtggcagagaagacagtgtagacaagaacaaaggtaccaat |
21793820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 295
Target Start/End: Complemental strand, 41037421 - 41037329
Alignment:
| Q |
203 |
tacaggaacatgggagtctcttgcatttctcttggcatcagtagcagagaagacagtgtaaacaagaacaaatgtaccaataatctctgctcc |
295 |
Q |
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| T |
41037421 |
tacaggaacatgagagtctctagcatttctcttggcatcagtagcagagaaaacagtgtagacaagaacaaaggtaccaacaatctcagctcc |
41037329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 2649409 - 2649497
Alignment:
| Q |
207 |
ggaacatgggagtctcttgcatttctcttggcatcagtagcagagaagacagtgtaaacaagaacaaatgtaccaataatctctgctcc |
295 |
Q |
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| T |
2649409 |
ggaacgtgagagtctcttgcatttctcttggcatcagtggcagagaagacagtgtagacaagaacaaaagtaccaacaatctcagctcc |
2649497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 40207055 - 40207140
Alignment:
| Q |
201 |
cttacaggaacatgggagtctcttgcatttctcttggcatcagtagcagagaagacagtgtaaacaagaacaaatgtaccaataat |
286 |
Q |
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| T |
40207055 |
cttacaggaacatgggaatccctagcacttctcttaggatcagtagcagagaaaacagtgtagaccaaaacaaaggtaccaataat |
40207140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 40835126 - 40835202
Alignment:
| Q |
207 |
ggaacatgggagtctcttgcatttctcttggcatcagtagcagagaagacagtgtaaacaagaacaaatgtaccaat |
283 |
Q |
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|||||||| |||||||| |||||||| |||| ||| || |||||||| || ||||||||||||||||| || ||||| |
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| T |
40835126 |
ggaacatgagagtctctagcatttcttttgggatctgtggcagagaacacggtgtaaacaagaacaaaggttccaat |
40835202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 31459830 - 31459918
Alignment:
| Q |
207 |
ggaacatgggagtctcttgcatttctcttggcatcagtagcagagaagacagtgtaaacaagaacaaatgtaccaataatctctgctcc |
295 |
Q |
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||||| ||||||||||| || | | |||||||||||| || |||||||| ||||| ||||||||||| ||||||| |||||| ||||| |
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| T |
31459830 |
ggaacgtgggagtctctggcgctacgcttggcatcagtggcggagaagacggtgtagacaagaacaaaggtaccaacaatctcagctcc |
31459918 |
T |
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