View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15347_low_16 (Length: 249)
Name: NF15347_low_16
Description: NF15347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15347_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 1906533 - 1906771
Alignment:
| Q |
11 |
cacagacaagtcgaacaatcgcggttaagtactctggcttcccgacataaaattcaggcaaacaagacacaagtttctggtattcttcacctgcttttgc |
110 |
Q |
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| T |
1906533 |
cacacacaagtcgaacaatcgcggttaagtactctggcttcccgacataaaattcaggcaaacaagacacaagtttctggtattcttcacctgcttttgc |
1906632 |
T |
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| Q |
111 |
aatctggaactgctctttcaattccaattcaatcagaaatcttacttgtttcttccttgttgttgtgcttgcaatcacttcaatgtactcgtgtgaacct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1906633 |
aatctggaactgctctttcaattccaattcaatcagaaatcttacttgtttcttccttgttgttgtgcttgcaatcacttcaatgtattcgtgtgaacct |
1906732 |
T |
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| Q |
211 |
aaaatacaaaagcaacaacagaacataataattatgcat |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
1906733 |
aaaatacaaaagcaacaacagaacataataattatgcat |
1906771 |
T |
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