View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15347_low_18 (Length: 235)
Name: NF15347_low_18
Description: NF15347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15347_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 36347557 - 36347765
Alignment:
| Q |
9 |
ctttatacaaatctcttgagcatatattacacacaaaagcaaggggggattaagttaaaatttgaaattaccggccaagtcttaattctaactccatttg |
108 |
Q |
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| T |
36347557 |
ctttatacaaatctcttgagcatatattacacacaaaagcaaggggggattaaattaaaatttgaaattaccggccaagtcttaattctaactccatttg |
36347656 |
T |
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| Q |
109 |
tagttccagaaatcttagctccattcaccattactcccgaaacaatgtccttggattttccagcccccaagcttccaatactaagaagatatatataaat |
208 |
Q |
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| T |
36347657 |
tagttccagaaatcttagctccattcaccattactcccgaaacaatgtccttggattttccagcccccaagcttccaatact---aagatatatataaat |
36347753 |
T |
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| Q |
209 |
cattgcaaataa |
220 |
Q |
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|||||||||||| |
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| T |
36347754 |
cattgcaaataa |
36347765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 36358889 - 36359032
Alignment:
| Q |
73 |
aaattaccggccaagtcttaattctaactccatttgtagttccagaaatcttagctccattcaccattactcccgaaacaatgtccttggattttccagc |
172 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| |||||||||||||||||| |
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| T |
36358889 |
aaattaccggccatgtcttaattctaactccatttgtagttccagaaatcttagctccattcactaacactccagaaacaaagtccttggattttccagc |
36358988 |
T |
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| Q |
173 |
ccccaagcttccaatactaagaagatatatataaatcattgcaaataat |
221 |
Q |
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| T |
36358989 |
ccccaaacttccaatact-----gagatatataaatcattgcaaataat |
36359032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 21183885 - 21183974
Alignment:
| Q |
74 |
aattaccggccaagtcttaattctaactccatttgtagttccagaaatcttagctccattcaccattactcccgaaacaatgtccttgga |
163 |
Q |
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||||||| |||| ||||||||||| |||||||| ||||||| ||| | |||||||||||||| ||| ||| ||||||| |||||||| |
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| T |
21183885 |
aattacctgccatgtcttaattcttactccattagtagttctagataatttagctccattcacagttattcctgaaacaaattccttgga |
21183974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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