View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15347_low_3 (Length: 425)
Name: NF15347_low_3
Description: NF15347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15347_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 153 - 405
Target Start/End: Original strand, 1907067 - 1907319
Alignment:
| Q |
153 |
agcctaaagtcaccaaaaggtagagaatccaaatccgcaatatgtgtctaataaactctatcttgtatattggatctaattaaaccctttaatattagat |
252 |
Q |
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| T |
1907067 |
agcctaaagtcaccaaaaggtagagaatccaaatccgcaatatgtgtctaataaactctatcttgtatattggatctaattcaaccctttaatattagat |
1907166 |
T |
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| Q |
253 |
tgtaaaatgtggaatgtccaaactttataataactatttaggtaatgtaggagttgaattatatatgcacctcctggaaattcatttgtggttttccatc |
352 |
Q |
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| T |
1907167 |
tgtaaaatgtggaatgtccaaactttataataactatttaggtaatgtaggagttgaattatatatgcacctcctggaaattcatttgtggttttccatc |
1907266 |
T |
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| Q |
353 |
ttgatgtgcaaaggttggtagtgaatcctctttcacatagcatagcagccact |
405 |
Q |
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| T |
1907267 |
ttgatgtgcaaaggttggtagtgaatcctctttcacatagcatagcagccact |
1907319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 1906920 - 1906984
Alignment:
| Q |
6 |
tgtaaaactaacttactcggacaatatatagacaaagatcctctacctttagggagggaaagtcg |
70 |
Q |
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| T |
1906920 |
tgtaaaactaacttactcggacaatatatagacaaagatcctctaccttcagggagggaaagtcg |
1906984 |
T |
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