View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15347_low_4 (Length: 420)
Name: NF15347_low_4
Description: NF15347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15347_low_4 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 6 - 404
Target Start/End: Complemental strand, 35227696 - 35227299
Alignment:
| Q |
6 |
agaagcataggcctgccaaagtgacccatcgaagccattgcagtaactatgataaataggaaacatgtaatgaaataaaggccacaaatagttcttgcag |
105 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35227696 |
agaaacataagcctgccaaagtgacccatcgaagccattgcagtaactatgataaataggaaacatgtaatgaaatagaggccacaaatagttcttgcag |
35227597 |
T |
|
| Q |
106 |
aatccgtcataaaactttttctggatttctgaaggaataaaagtagggaagaaattgaattcctccaacaactgggaaacattctcttgctcactttcat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35227596 |
aatccgtcataaaactttttctggatttctgaaggaataaaagtagggaagcaattgaattcctccaacaactgggaaacattctcttgctcactttcat |
35227497 |
T |
|
| Q |
206 |
caacatcaaccttcagagatcccacgtaaacaacatcaatatcagaagagagaccatcctttaactgcctaaaaattgaatcttcatcataactaaagca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35227496 |
caacatcaaccttcagagatcccacgtaaacaacatcaatatcagaagagagaccatcctttaactgcctaaaaattgaatcttcatcataact-aagca |
35227398 |
T |
|
| Q |
306 |
ccatctaccagtaatgtcatcctttgtagaatttagaggaagataatttgctacgattatcatcttccgatgtattccttctggcgagaaagcacttga |
404 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35227397 |
ccatctaccagtaatgtcatcctttgtagaatttagaggaagataatttgctatgattatcatcttccgatgtattccttctggcgagaaagcacttga |
35227299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 6 - 404
Target Start/End: Complemental strand, 34507468 - 34507070
Alignment:
| Q |
6 |
agaagcataggcctgccaaagtgacccatcgaagccattgcagtaactatgataaataggaaacatgtaatgaaataaaggccacaaatagttcttgcag |
105 |
Q |
| |
|
|||| |||| ||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34507468 |
agaaacataagcctgccaaagtgactcatcaaagccattgcagtaactctgatacataggaaacatgtaatgaaatagaggccacaaatagttcttgcag |
34507369 |
T |
|
| Q |
106 |
aatccgtcataaaactttttctggatttctgaaggaataaaagtagggaagaaattgaattcctccaacaactgggaaacattctcttgctcactttcat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
34507368 |
aatccgtcataaaactttttctggatttctgaaggaataaaagtagggaagctattgaattcctccaacaactgggaaacattatcttgctcacttttat |
34507269 |
T |
|
| Q |
206 |
caacatcaaccttcagagatcccacgtaaacaacatcaatatcagaagagagaccatcctttaactgcctaaaaattgaatcttcatcataactaaagca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
34507268 |
caacatcaaccttcagagatcccacgtaaacaacatcaatatcagaagagagaccatcctttaactgcctaaaaattgaatcttcatcataactaaaaca |
34507169 |
T |
|
| Q |
306 |
ccatctaccagtaatgtcatcctttgtagaatttagaggaagataatttgctacgattatcatcttccgatgtattccttctggcgagaaagcacttga |
404 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
34507168 |
ccatctaccagtaatgtcatcctttttagaatttagagcaagataatttgctatgattatcatcttccaatgtattccttctggcgagaaagcacttga |
34507070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 6 - 404
Target Start/End: Complemental strand, 27618672 - 27618274
Alignment:
| Q |
6 |
agaagcataggcctgccaaagtgacccatcgaagccattgcagtaactatgataaataggaaacatgtaatgaaataaaggccacaaatagttcttgcag |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
27618672 |
agaaacataagcctgccaaagtgacccatcaaagccattgcagtaactctgatacatatgaaacatgtaatgaaatagaggccacaaatagttcttgcag |
27618573 |
T |
|
| Q |
106 |
aatccgtcataaaactttttctggatttctgaaggaataaaagtagggaagaaattgaattcctccaacaactgggaaacattctcttgctcactttcat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||| || |
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|
| T |
27618572 |
aatccgtcataaaactttttctggatttctgaaggaataaaagtagggaagctattgaattccgccaaaaactgggaaacattatcttgctcacttttat |
27618473 |
T |
|
| Q |
206 |
caacatcaaccttcagagatcccacgtaaacaacatcaatatcagaagagagaccatcctttaactgcctaaaaattgaatcttcatcataactaaagca |
305 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27618472 |
caacattaacctttagagatcccacgtaaacaacatcaatatcagaagagagaccatcctttaactgcctaaaaattgaatcttcatcataactaaagca |
27618373 |
T |
|
| Q |
306 |
ccatctaccagtaatgtcatcctttgtagaatttagaggaagataatttgctacgattatcatcttccgatgtattccttctggcgagaaagcacttga |
404 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
27618372 |
ccatctaccagtaatgtcatcctttttagaatttagagcaagataatttgctatgattatcatcttctaatgtattccttctggcgataaagcacttga |
27618274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 34507541 - 34507926
Alignment:
| Q |
18 |
ctgccaaagtgacccatcgaagccattgcagtaactatgataaataggaaacatgtaatgaaataaaggccacaaatagttcttgcagaatccgtcataa |
117 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
34507541 |
ctgccaaagttacccattgaagccactgcagtaactgtgatacataggaaacatgtaatgaaatagaggccacaaatagttcttgcagaattcgtcataa |
34507640 |
T |
|
| Q |
118 |
aactttttctggatttctgaaggaataaaagtagggaagaaattgaattcctccaacaactgggaaacattctcttgctcactttcatcaacatcaacct |
217 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| |||||||||| ||||||||||| | |
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|
| T |
34507641 |
aactttttctagatt-ctgaaggaataaaagtagggaagcaattgaattcctccaacatctaggaaacattctcatgctcacttttatcaacatcaattt |
34507739 |
T |
|
| Q |
218 |
tcagagatcccacgtaaacaacatcaatatcagaagagagaccatcctttaactgcctaaaaattgaatcttcatcataactaaagcaccatctaccagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34507740 |
tcagagatcccacgtaaacaacatcaatatcataagagagaccatcctttaactgcctaaaaattgaatcttcatcataactaaagcaccatctaccagt |
34507839 |
T |
|
| Q |
318 |
aatgtcatcctttgtagaatttagaggaagataatttgctacgattatcatcttccgatgtattccttctggcgagaaagcacttga |
404 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34507840 |
aatgtcatcctttttagaatttagaggaagataatttgctacgattatcgtctttcgatgtattccttctggcgagaaagcacttga |
34507926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 74 - 387
Target Start/End: Original strand, 27621576 - 27621889
Alignment:
| Q |
74 |
aatgaaataaaggccacaaatagttcttgcagaatccgtcataaaactttttctggatttctgaaggaataaaagtagggaagaaattgaattcctccaa |
173 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27621576 |
aatgaaatagaggccaaaaatagttcttgcagaatccgtcataaaactttttctggatttctgaaggaataaaagtagggaagctattgaattcctccaa |
27621675 |
T |
|
| Q |
174 |
caactgggaaacattctcttgctcactttcatcaacatcaaccttcagagatcccacgtaaacaacatcaatatcagaagagagaccatcctttaactgc |
273 |
Q |
| |
|
||||||||||||||| |||||||| |||| ||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27621676 |
caactgggaaacattatcttgctcgcttttatcaacatcaaccttcagagatcacacgcaaacaacatcaatatcaaaagagagaccatcctttaactgc |
27621775 |
T |
|
| Q |
274 |
ctaaaaattgaatcttcatcataactaaagcaccatctaccagtaatgtcatcctttgtagaatttagaggaagataatttgctacgattatcatcttcc |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27621776 |
ctaaaaattgaatcttcatcataactaaagcaccatctaccagtaatgtcatactttttagaatttagaggaagataatttgctacgattatcgtcttcc |
27621875 |
T |
|
| Q |
374 |
gatgtattccttct |
387 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27621876 |
gatgtattccttct |
27621889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 6 - 168
Target Start/End: Original strand, 27621411 - 27621573
Alignment:
| Q |
6 |
agaagcataggcctgccaaagtgacccatcgaagccattgcagtaactatgataaataggaaacatgtaatgaaataaaggccacaaatagttcttgcag |
105 |
Q |
| |
|
|||| |||| || ||||||||| |||||||||||||| |||||||||| ||||| |||||||||||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
27621411 |
agaaacataagcttgccaaagttacccatcgaagccactgcagtaactctgatacataggaaacatggaatgaaatagaggccaaaaatagttcttgcag |
27621510 |
T |
|
| Q |
106 |
aatccgtcataaaactttttctggatttctgaaggaataaaagtagggaagaaattgaattcc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27621511 |
aatccgtcataaaactttttctggatttctgaaggaataaaagtagggaagctattgaattcc |
27621573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 92 - 356
Target Start/End: Original strand, 25087624 - 25087889
Alignment:
| Q |
92 |
aatagttcttgcagaatccgtcataaaactttttctggatttctgaaggaataaaagtagggaagaaattgaattcctccaacaactgggaaacattctc |
191 |
Q |
| |
|
||||||| |||| |||||||| | |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
25087624 |
aatagtttttgcgaaatccgtcgttaaactttttctggatttccagaggaataaaagtaggcaagaaattgaattcctccaacttctaggaaatattctc |
25087723 |
T |
|
| Q |
192 |
ttgctcactttcatcaacat-caaccttcagagat--cccacgtaaacaacatcaatatcagaagagagaccatcctttaactgcctaaaaattgaatct |
288 |
Q |
| |
|
| |||| |||||||||||| || ||||||||||| ||||| ||||| ||| |||||||| |||| ||| ||||||||||| |||||||||||||||| |
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|
| T |
25087724 |
tcactcattttcatcaacattcatccttcagagatatcccacataaacgacaccaatatcataagatagattatcctttaactccctaaaaattgaatct |
25087823 |
T |
|
| Q |
289 |
tcatcataactaaagcaccatctaccagtaatgtcatcctttgtagaatttagaggaagataatttgc |
356 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| ||| ||||| ||||||| ||||||| |
|
|
| T |
25087824 |
tcatcataactaaagcaccatctacca-aattgtcatcctttttagcattta-aggaagaaaatttgc |
25087889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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