View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15347_low_5 (Length: 418)
Name: NF15347_low_5
Description: NF15347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15347_low_5 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 42175683 - 42176071
Alignment:
| Q |
15 |
atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42175683 |
atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc |
42175782 |
T |
|
| Q |
115 |
ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42175783 |
ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga |
42175882 |
T |
|
| Q |
215 |
ccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaaccattt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42175883 |
ccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaaccattt |
42175982 |
T |
|
| Q |
315 |
gtctcatgaacttgcatatttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaagagtacttttgctggtcctacc |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42175983 |
gtctcatgaacttgcatatttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaagagtacttttgctggtcctacc |
42176071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 402
Target Start/End: Original strand, 42144564 - 42144951
Alignment:
| Q |
15 |
atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc |
114 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
42144564 |
atgaatgaaagaaatcaacaaattcaggaactgaaacatatctataaggttcatctcttttaaaccagtattgttgttgatctttcttggatgttacttc |
42144663 |
T |
|
| Q |
115 |
ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42144664 |
ttgtaagaaatcagcaacaccttttctctctggacacctaaagcctgtgtattcgaagaactctagcacattttcacgcggaccttgatatactatttga |
42144763 |
T |
|
| Q |
215 |
ccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaaccattt |
314 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||| || |||||| |||||| ||| ||||||| || |
|
|
| T |
42144764 |
ccttctgaaagaagaataatgtcgtcaaagaggtcaaatgtctctggtgctggctgtaaaagcgaaacgatgacggttgcatccagtatatgaaccactt |
42144863 |
T |
|
| Q |
315 |
gtctcatgaacttgcatatttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaagagtacttttgctggtcctac |
402 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
42144864 |
gtctcacgaacttgcatatttgaaaagtggttgaactatccaatcccgttgatatttcatccataaagagtgcttgtgctggtcctac |
42144951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 15 - 402
Target Start/End: Original strand, 42156511 - 42156898
Alignment:
| Q |
15 |
atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc |
114 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42156511 |
atgaatgaaagaaatcaacaaattcaggaactgaaacatatctataaggttcatctattttaaaccagtattgttgttgatctttcttggatgttacttc |
42156610 |
T |
|
| Q |
115 |
ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga |
214 |
Q |
| |
|
||||||||||||||||| | ||||||||| || |||||||| || |||||||| ||||||||||| || || ||||| || |||||||||||||||||| |
|
|
| T |
42156611 |
ttgtaagaaatcagcaatcccttttctctcaggacacctaaaacctgtgtattcaaagaactctagtacgttctcacgtggtccttgatatacaatttga |
42156710 |
T |
|
| Q |
215 |
ccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaaccattt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42156711 |
ccttctgaaagtagaataatgtcgtcaaagagttcaaatgtctctggtgctggctgtaaaagagaaatgactacggttacatccattatatgaaccattt |
42156810 |
T |
|
| Q |
315 |
gtctcatgaacttgcatatttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaagagtacttttgctggtcctac |
402 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| ||||| |
|
|
| T |
42156811 |
gtctcatgaacttgcatatttgaaaagtggttgaactatccaatcctgttgatatttcatccataaagagtgcttgtgctggccctac |
42156898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 42135431 - 42135819
Alignment:
| Q |
15 |
atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc |
114 |
Q |
| |
|
|||||| |||| | |||| |||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
42135431 |
atgaatcaaaggaatcaacaaattcagaaactgaaacatatttataaggtttatctcttctaaaccaatattgttgttggtcttttttggatgttacttc |
42135530 |
T |
|
| Q |
115 |
ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga |
214 |
Q |
| |
|
|||||| |||||||| || | |||||| || || | || || || ||| || |||| || ||||||||| || || ||||| |||||||||||| |
|
|
| T |
42135531 |
ttgtaaaaaatcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactgtaacacattttcgcgtggtccttggtatacaatttga |
42135630 |
T |
|
| Q |
215 |
ccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaaccattt |
314 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||| ||| ||||| || | |||||||| | |||||||||||||| |
|
|
| T |
42135631 |
ccttctgaaagtaggataatgtcatcaaagagttcaaatgtctctggtgctggttgtagaagagaaatcaccattgttacatctaatatgtgaaccattt |
42135730 |
T |
|
| Q |
315 |
gtctcatgaacttgcatatttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaagagtacttttgctggtcctacc |
403 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42135731 |
gtttcatgaacttggttatttgaaaagtggttgaactatctaatcctgttgatatttcatccatgaacagtacttttgctggtcctacc |
42135819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 39577320 - 39577366
Alignment:
| Q |
224 |
agtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctg |
270 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||||| |||||| |
|
|
| T |
39577320 |
agtagaataatgtcgtcaaaaagatcataagtctctggtggtggctg |
39577366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 39334985 - 39334936
Alignment:
| Q |
332 |
atttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaa |
381 |
Q |
| |
|
|||| |||||| |||||||||||||| || || ||||||||||||||||| |
|
|
| T |
39334985 |
atttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa |
39334936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 39346243 - 39346194
Alignment:
| Q |
332 |
atttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaa |
381 |
Q |
| |
|
|||| |||||| |||||||||||||| || || ||||||||||||||||| |
|
|
| T |
39346243 |
atttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa |
39346194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 39360794 - 39360745
Alignment:
| Q |
332 |
atttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaa |
381 |
Q |
| |
|
|||| |||||| |||||||||||||| || || ||||||||||||||||| |
|
|
| T |
39360794 |
atttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa |
39360745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 39541570 - 39541619
Alignment:
| Q |
332 |
atttcaaaagtggttgagctatccaatcctgttgatatttcatccatgaa |
381 |
Q |
| |
|
|||| |||||| |||||||||||||| || || ||||||||||||||||| |
|
|
| T |
39541570 |
atttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa |
39541619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 39577433 - 39577477
Alignment:
| Q |
337 |
aaaagtggttgagctatccaatcctgttgatatttcatccatgaa |
381 |
Q |
| |
|
|||||| |||||||||||||| || || ||||||||||||||||| |
|
|
| T |
39577433 |
aaaagttgttgagctatccaaaccagtagatatttcatccatgaa |
39577477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 2900557 - 2900642
Alignment:
| Q |
182 |
acattttcacgcggaccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctgg |
267 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||||||| || || | ||||||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
2900557 |
acatgttcacgcggtccttgatagacaatttgaccatcggatataagaataatgtcatcaaaaagttcataagtctctggtgctgg |
2900642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 270
Target Start/End: Complemental strand, 2874413 - 2874325
Alignment:
| Q |
182 |
acattttcacgcggaccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctg |
270 |
Q |
| |
|
||||||||||| || ||||| || ||||||| ||| || || | ||||||||||| |||||||||||| | ||||||||||||||||| |
|
|
| T |
2874413 |
acattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctg |
2874325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 34144416 - 34144516
Alignment:
| Q |
136 |
ttttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttgaccttctgaaagtagaataatg |
235 |
Q |
| |
|
||||||||| || || ||||| || ||||||| ||||||| |||||||||||| | |||||||| ||||||||||| ||||| ||||||| |||||| |
|
|
| T |
34144416 |
ttttctctcgggacatctaaaacctatgtattcaaagaactgaagcacattttcatgtggaccttggaatacaatttgagcttct-aaagtaggataatg |
34144514 |
T |
|
| Q |
236 |
tc |
237 |
Q |
| |
|
|| |
|
|
| T |
34144515 |
tc |
34144516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 41690493 - 41690575
Alignment:
| Q |
194 |
ggaccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaag |
276 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||| || ||||| |||||||| |||||||| |||||||| || |||||||| |
|
|
| T |
41690493 |
ggaccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaagatcaaatgtttctggtgcaggttgtaaaag |
41690575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 2163683 - 2163787
Alignment:
| Q |
109 |
tacttcttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatataca |
208 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| || || ||| | || ||| | | ||||| |||||||| |||||||| | || |||||||| ||| |
|
|
| T |
2163683 |
tacttcttgtaagaaatcagcaactccttttctttcaggacacttgaatcccattgactcgaaaaactctagtacattttctcttggtccttgatacaca |
2163782 |
T |
|
| Q |
209 |
atttg |
213 |
Q |
| |
|
||||| |
|
|
| T |
2163783 |
atttg |
2163787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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