View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15347_low_9 (Length: 357)
Name: NF15347_low_9
Description: NF15347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15347_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 36515020 - 36515350
Alignment:
| Q |
9 |
agcacagatacggacacaaacactggacacaaaaatggtcaaggaagtacccaatcatgacaagaaagcatgaaatggtcagctccataacttctattcc |
108 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515020 |
agcacagatacggacacagacactggacacaaaaatggtcaaggaagtacccaatcatgacaagaaagcatgaaatggtcagctccataacttctattcc |
36515119 |
T |
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| Q |
109 |
aataagcatatttgtgtgatatgatatgaacataatcaccaatagttcttcccaaaacagctttgtcacgaataactgggtgaaagagatgctcaaggat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515120 |
aataagcatatttgtgtgatatgatatgaacataatcaccaatagttcttcccaaaacagctttgtcacgaataactgggtgaaagagatgctcaaggat |
36515219 |
T |
|
| Q |
209 |
cataacaacactaaatggaagaaagtagacatgagcttcatttggattctgagtccgaaacaaagtattgttttccaataagttgataaatattccctcc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515220 |
cataacaacactaaatggaagaaagtagacatgagcttcatttggattctgagtccgaaacaaagtattgttttccaataagttgataaatattccctcc |
36515319 |
T |
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| Q |
309 |
attgaatatatatttttgcaaggaccataat |
339 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
36515320 |
attgaatatatatttttgcaaggaccataat |
36515350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 36806206 - 36805878
Alignment:
| Q |
9 |
agcacagatacggacacaaacactggacacaaaaatggtcaaggaagtacccaatcatgacaagaaagcatgaaatggtcagctccataacttctattcc |
108 |
Q |
| |
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|||||||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36806206 |
agcacagatacggacacagacaccagacacagaaatggtcaagaaagtacccaatcatgacaagaaagcatgaaatgatcagctccataacttctattcc |
36806107 |
T |
|
| Q |
109 |
aataagcatatttgtgtgatatgatatgaacataatcaccaatagttcttcccaaaacagctttgtcacgaataactgggtgaaagagatgctcaaggat |
208 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36806106 |
aatatgcatatttgtgtgatatgatatgaacataatcaccaatagttcttcccaaaacagctttgtcacgaataactgggtgaaagagatgttcaaggat |
36806007 |
T |
|
| Q |
209 |
cataacaacactaaatggaagaaagtagacatgagcttcatttggattctgagtccgaaacaaagtattgttttccaataagttgataaatattccctcc |
308 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36806006 |
cataacaacactaaatggaagaaagtaggcatgagcttcatttggattacgagtccgaaacaaagtattgttttccaataagttgataaatattccctcc |
36805907 |
T |
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| Q |
309 |
attgaatatatatttttgcaaggaccata |
337 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
36805906 |
attgaatatatatttttgcaaggaccata |
36805878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 41756757 - 41756718
Alignment:
| Q |
56 |
tacccaatcatgacaagaaagcatgaaatggtcagctcca |
95 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
41756757 |
tacccaatcatggcaagaaagcatgaaatgatcagctcca |
41756718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 41764699 - 41764634
Alignment:
| Q |
56 |
tacccaatcatgacaagaaagcatgaaatggtcagctccataacttctattccaataagcatattt |
121 |
Q |
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|||||||||||| |||| ||| |||||||| |||||||||| ||||| |||||||| | |||||| |
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| T |
41764699 |
tacccaatcatggcaagcaagtatgaaatgatcagctccatgacttcggttccaatagggatattt |
41764634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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