View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15348_high_10 (Length: 242)
Name: NF15348_high_10
Description: NF15348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15348_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 3958126 - 3957895
Alignment:
| Q |
1 |
aatgttgaataactcgacttctatccatatctaccgactacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcagccggaggaaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3958126 |
aatgttgaataactcgactgctatccatatctaccgactacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcagccggaggaaag |
3958027 |
T |
|
| Q |
101 |
aaatacatatgataatgctaagcacagtcctactccatttgttaacataatcaaataattccatttgttcaacgatgtttttatctcttaaggggattat |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3958026 |
aaatacatatgatgatgctaagcacagtcctactccatttgttaacataatcaaataattccatttgttcaacgatgtttttatctcttaaggggattat |
3957927 |
T |
|
| Q |
201 |
gggtctgacgccaaacccttttaactccacct |
232 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
3957926 |
gggtctgatgccaaacccttttaactccacct |
3957895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 3998481 - 3998588
Alignment:
| Q |
38 |
ctacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcagccggaggaaagaaatacatatgataatgctaagcacagtcctactcca |
137 |
Q |
| |
|
|||||| ||||| ||||| || ||||||||||||||| ||||||||||||| | | ||||| |||||||||| || || ||||||||||||||| |||| |
|
|
| T |
3998481 |
ctacttgcatcatactatagagttgtgtctaaatcaaattcttcatcttcaactgtaggaaggaaatacataggacgatactaagcacagtcctattcca |
3998580 |
T |
|
| Q |
138 |
tttgttaa |
145 |
Q |
| |
|
|||||||| |
|
|
| T |
3998581 |
tttgttaa |
3998588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 232
Target Start/End: Original strand, 4007473 - 4007640
Alignment:
| Q |
65 |
tctaaatcaacttcttcatcttcagccggaggaaagaaatacatatgataatgctaagcacagtcctactccatttgttaacataatcaaataattccat |
164 |
Q |
| |
|
|||| ||||| ||||||||||||| | | |||| |||||||||| ||| || ||||||||||||||| |||||||||| | ||||||||| |||||||| |
|
|
| T |
4007473 |
tctagatcaaattcttcatcttcaactgtaggagggaaatacataggatgatactaagcacagtcctattccatttgttcatataatcaaacaattccat |
4007572 |
T |
|
| Q |
165 |
ttgttcaacgatgtttttatctcttaaggggattatgggtctgacgccaaacccttttaactccacct |
232 |
Q |
| |
|
|| || || || || | || | || || | ||||||| || | ||||||||||||||||||||||| |
|
|
| T |
4007573 |
tttttgaatgagattatgatatgttgagttgcttatggggcttatgccaaacccttttaactccacct |
4007640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 4022627 - 4022678
Alignment:
| Q |
38 |
ctacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcag |
89 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
4022627 |
ctacttacatcaatctatagacttgtgactaaatcaacttcttcatcttcag |
4022678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 3958189 - 3958138
Alignment:
| Q |
38 |
ctacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcag |
89 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||||||| |||||||||||||| |
|
|
| T |
3958189 |
ctacttacatcaaactatagacttctgtgtaaatcaaattcttcatcttcag |
3958138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 3984567 - 3984668
Alignment:
| Q |
77 |
tcttcatcttcagccggaggaaagaaatacatatgataatgctaagca---cagtcctactccatttgttaacataatcaaataattccatttgttcaac |
173 |
Q |
| |
|
|||||||||||||| | || || |||||||||| ||| |||||||||| ||||||| |||||||||||| | |||||| ||||||||||| ||||| |
|
|
| T |
3984567 |
tcttcatcttcagctgcagtaaggaaatacataggatgatgctaagcagcacagtcctcttccatttgttaatacgatcaaacaattccatttgctcaac |
3984666 |
T |
|
| Q |
174 |
ga |
175 |
Q |
| |
|
|| |
|
|
| T |
3984667 |
ga |
3984668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 4015067 - 4015107
Alignment:
| Q |
39 |
tacttacatcaaactatggacttg-tgtctaaatcaacttc |
78 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
4015067 |
tacttacatcaaactatagacttgttgtctaaatcaacttc |
4015107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 4022686 - 4022730
Alignment:
| Q |
118 |
ctaagcacagtcctactccatttgttaacataatcaaataattcc |
162 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||||||| |||||| |
|
|
| T |
4022686 |
ctaaccacagtcctattccattggttaacataatcaaacaattcc |
4022730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University