View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15348_high_11 (Length: 238)
Name: NF15348_high_11
Description: NF15348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15348_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 5663023 - 5663240
Alignment:
| Q |
3 |
aatatatagttggtgacacgaggtcatattttgattgtctccttcctcgtttaagctcaacacggagataacttgtatgaagatggggtgagtgatacca |
102 |
Q |
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| T |
5663023 |
aatatatagttggtgacacgaggtcatattttgattgtctccttcctcgtttaagctcaacacggagataacttgtatgaagatggggtgagtgatacca |
5663122 |
T |
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| Q |
103 |
tagagatagattgaatacaaatttccaacaaaggagtttaactttatcatagaaggtaaaacagatctccatggagaagcctattaggctatgtgaaaaa |
202 |
Q |
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| T |
5663123 |
tagagatagattgaatacaaatttccaacaaaggagtttaactttatcatagaaggtaaaacagatctccatggagaagcctattaggctatgtgaaaaa |
5663222 |
T |
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| Q |
203 |
gagtacacgaggatggcc |
220 |
Q |
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|||||||||||||||||| |
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| T |
5663223 |
gagtacacgaggatggcc |
5663240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 5664631 - 5664663
Alignment:
| Q |
3 |
aatatatagttggtgacacgaggtcatattttg |
35 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
5664631 |
aatatatagttggtgacacgaggtcatattttg |
5664663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 15063395 - 15063363
Alignment:
| Q |
3 |
aatatatagttggtgacacgaggtcatattttg |
35 |
Q |
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|||||||||||||||||| |||||||||||||| |
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|
| T |
15063395 |
aatatatagttggtgacaagaggtcatattttg |
15063363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 6824844 - 6824876
Alignment:
| Q |
3 |
aatatatagttggtgacacgaggtcatattttg |
35 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
6824844 |
aatatatagttggtgacacaaggtcatattttg |
6824876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 28787299 - 28787267
Alignment:
| Q |
3 |
aatatatagttggtgacacgaggtcatattttg |
35 |
Q |
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|||||||||||||||||||||| |||||||||| |
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|
| T |
28787299 |
aatatatagttggtgacacgagatcatattttg |
28787267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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