View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15348_high_12 (Length: 237)
Name: NF15348_high_12
Description: NF15348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15348_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 25612137 - 25611905
Alignment:
| Q |
1 |
tagttatcaatatatttttccatttcaataaagaaaagtctgggatacttttagaatttttactgagctagggggtgatttgcttaggaataggcattac |
100 |
Q |
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| T |
25612137 |
tagttatcaatatatttttccatttcaataaagaaaagtctgggatacttttagaatttttactgagctagggggtgattcgcttaggaataggcattac |
25612038 |
T |
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| Q |
101 |
tcggttaaatccggtattaaccttattgcgaggcacaaattgcataacgacaaattctatgcagaaggtgattgaaatgatgtacggcaagtccttgctc |
200 |
Q |
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| T |
25612037 |
tcggttaaatccggtattaaccttattgcgaggcacaaattgcataacgacaaattctatgcagaaggtgattgaaatgatgtatggcaagtccttgctc |
25611938 |
T |
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| Q |
201 |
cacctaaacctaaatatctgttgtggcgcattt |
233 |
Q |
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| T |
25611937 |
cacctaaacctaaatatctgttgtggcgcattt |
25611905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 25616098 - 25616330
Alignment:
| Q |
1 |
tagttatcaatatatttttccatttcaataaagaaaagtctgggatacttttagaatttttactgagctagggggtgatttgcttaggaataggcattac |
100 |
Q |
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||||||||||||| ||| ||||||||| |||||| ||| |||||| |||||||||||| |||||||||||||||||||| ||||||||| ||| |||| |
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| T |
25616098 |
tagttatcaatatggtttgccatttcaaaaaagaagagtatgggattcttttagaatttctactgagctagggggtgattctcttaggaatgggcgttac |
25616197 |
T |
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| Q |
101 |
tcggttaaatccggtattaaccttattgcgaggcacaaattgcataacgacaaattctatgcagaaggtgattgaaatgatgtacggcaagtccttgctc |
200 |
Q |
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| T |
25616198 |
tcggttaaatccaactacaaccttcttacgagggacatattgcataacgacaaattttatgc---aggtgattgaaatgatgtgtggcgagtccttgcta |
25616294 |
T |
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| Q |
201 |
cacctaaacctaaatatctgttgtggcgcatttgtc |
236 |
Q |
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|||||||| ||||| || ||||||||| |||||||| |
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| T |
25616295 |
cacctaaagctaaaaatttgttgtggcacatttgtc |
25616330 |
T |
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