View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15348_high_13 (Length: 234)
Name: NF15348_high_13
Description: NF15348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15348_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 51767722 - 51767942
Alignment:
| Q |
1 |
cagatatcagttggtcaaacatggaaaccattttacctttttctttattaccctatcacaagataatttagagaacttaccatatcataaagttagaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51767722 |
cagatatcagttggtcaaacatggaaaccattttacctttttctttattaccctatcacaagataatttagagaacttaccatatcataaagttagaatt |
51767821 |
T |
|
| Q |
101 |
ccagatcataaagctctggtgattcatctccagttacaaaagcatgcgtagttcaaaagtatttcattctttactttttctggtataatttccttatact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51767822 |
ccagatcataaagctctggtgattcatctccagttacaaaagcatgcgtagttcaaaagtatttcattctttactttttctggtataatttccttatact |
51767921 |
T |
|
| Q |
201 |
tgggggatagcaagccaatac |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
51767922 |
tgggggatagcaagccaatac |
51767942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University