View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15348_high_3 (Length: 525)
Name: NF15348_high_3
Description: NF15348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15348_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 17 - 525
Target Start/End: Complemental strand, 26228471 - 26227962
Alignment:
| Q |
17 |
agaagttcatactttagatgatgtgttgatagttctcccacctattcattagcttccaaggaatgagataatgatttccgaaagctttcaccactagagc |
116 |
Q |
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| T |
26228471 |
agaagttcatactttagatgatgtgtagacagttctcccacctattcattagcttccaaggaatgagataatgatttccgaaagctttcaccattagagc |
26228372 |
T |
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| Q |
117 |
tgaatcacattccaaccaaagattgttccattcatgttgtgaagctaattaaattgctctcattgctccaactagctcagcatgataggcactccccaag |
216 |
Q |
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|||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26228371 |
tgaatcacattccaaccaaagaatgttccattgatgttgcgaagctaattaaattgctctcattgctccaactagctcagcatgataggcactccccaag |
26228272 |
T |
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| Q |
217 |
cttgtgttttcagcaaaacatagaagaaaattggcttggttgttgatgaatatacctccacaagcggaagtatttatatttggagaacca-tttgtgttg |
315 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
26228271 |
cttgtgttttcagaaaaacatagaagaaaattggcttggttgttcctgaatatacctccacaagcggaagtattggtatttggagaaccattttgtgttg |
26228172 |
T |
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| Q |
316 |
caattaacccaattaaatattggaggattacaaattgcctaataattatgggagcttttgttgacgaacttatgttgctttaaacctaaagaggtcttgg |
415 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26228171 |
cacttaacccaattaaatattggaggattccaaattgcctaataattatgggagcttttggtgacgaacttatgttgctttaaacctaaagaggtcttgg |
26228072 |
T |
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| Q |
416 |
actctagaggcagctactttttcaacaatggtggtgaggagttcgcctggaagtctgtccatttttcagattttttctctctcttttgtaggaggaagaa |
515 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| || | ||||||||||||||||||||||| |
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| T |
26228071 |
actccagaggcagcaactttttcaacaatggtggtgaggagttcgtctggaagtccgtccatttttcagatattatttctctcttttgtaggaggaagaa |
26227972 |
T |
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| Q |
516 |
gagcgagagt |
525 |
Q |
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| T |
26227971 |
gagcgagagt |
26227962 |
T |
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