View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15348_high_4 (Length: 415)
Name: NF15348_high_4
Description: NF15348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15348_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 6 - 336
Target Start/End: Original strand, 2011555 - 2011880
Alignment:
| Q |
6 |
aaattgatgttttttggaaatttaaaggataaaaagcatnnnnnnnnnnnnggttatatgaactaaaattagagtactctatattttcatgaccaacaaa |
105 |
Q |
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| T |
2011555 |
aaattgatgttttttggaaatttaaaggataaaaagcataaaaaaaa----ggttacatgaactaaaattagagtactctatttat--atgacaaacaaa |
2011648 |
T |
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| Q |
106 |
caacatatttaatcataaatttaattagtggg-ggctattagaaagctttgaagaaaatttaggtacagtaacatgaatacttatggtgttgtctccaat |
204 |
Q |
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| T |
2011649 |
caacatatttaatcctaaaattaattagtgggaggctattagaaagctttgaagaaaatttaggtacagtaacatgaatacttatggtgttgtctccaat |
2011748 |
T |
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| Q |
205 |
ctaacatgagatgttgactatgtgctcacaattatttattaccattttttataagaatgtctacatgttatgttataaatggataatagcatcaatgctc |
304 |
Q |
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| T |
2011749 |
ctaacatgagatgttgactatgtgctcacaattatttattaccattttttaaaagaatgtctacatgttatgttataaatggataatagcagcaatggtc |
2011848 |
T |
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| Q |
305 |
atagtactgtagtcaagtttcatcttgaactt |
336 |
Q |
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| T |
2011849 |
atagtactgtagttaagtttcatgttgaactt |
2011880 |
T |
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