View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15348_high_5 (Length: 366)
Name: NF15348_high_5
Description: NF15348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15348_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 2101507 - 2101806
Alignment:
| Q |
1 |
cgttcatcttcttcatttatgaatgattaggatctgtttggcaaaccgaaaatttggattatgtttcataagcttttaaaaaagttttgttttgtaattt |
100 |
Q |
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| T |
2101507 |
cgttcatcttcttcatttatgaatgattaggatctgtttggcaaaccgcaaatttggattatgtttcataagcttttaaaaaagttttgttttgtaattt |
2101606 |
T |
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| Q |
101 |
tcacgttttcatgagcttatagtttatatttaccggcttatatga-ttttttataacctttatcatttttcattctcaattttaaccttgtagctttagt |
199 |
Q |
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| T |
2101607 |
tcacgttttcacgagcttatagtttatatttacaggcttatatgatttttttataacctttatcatttttcattctcaattttaaccttgtagctttagt |
2101706 |
T |
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| Q |
200 |
tgaactaacttattagacactacacatgttaggtgtgaacacttttacccgatttgaatcttatgtgtc-taagtttttggtggtgtaaccagtgttatt |
298 |
Q |
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| T |
2101707 |
tgaactaatttattagacactacacatgttaggtgtg-acacttttacccgatttgaatcttatgtgtcttaagtttttggtggtgtaaccagtgttatt |
2101805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 2102059 - 2102112
Alignment:
| Q |
294 |
ttattatttatacactacattacacttcaaatgtcatcctaatgtattgatatc |
347 |
Q |
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| T |
2102059 |
ttattatttatacactacattacacttcaaatgtcatcctaatgtattgatatc |
2102112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 39185054 - 39184928
Alignment:
| Q |
17 |
ttatgaatgattaggatctgtttggcaaaccgaaaatttggattatgtttcataagcttttaaaaaagttttgttttgtaattttcacgttttcatgagc |
116 |
Q |
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|||| |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
39185054 |
ttatcaatggttaggatctgtttggcaaaccgcaaatttggattatgttttataagcttttaaaagagttttgttttgtaattttcacgttttcaagagc |
39184955 |
T |
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| Q |
117 |
ttatagtttatatttaccggcttatat |
143 |
Q |
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| T |
39184954 |
ttatagtttatatttaccggcttatat |
39184928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 39184892 - 39184848
Alignment:
| Q |
159 |
ttatcatttttcattctcaattttaaccttgtagctttagttgaa |
203 |
Q |
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| T |
39184892 |
ttatcatttttcattctcaattttaaccttgtagctttaattgaa |
39184848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 39184433 - 39184394
Alignment:
| Q |
260 |
ttatgtgtctaagtttttggtggtgtaaccagtgttatta |
299 |
Q |
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| T |
39184433 |
ttatgtgtctaagtttttggtggtgtaactagtgttatta |
39184394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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