View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15348_high_6 (Length: 310)
Name: NF15348_high_6
Description: NF15348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15348_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 31 - 303
Target Start/End: Complemental strand, 25612416 - 25612146
Alignment:
| Q |
31 |
gtcttgtgcatatcaactgggtatgactgtttcataagtgtggttcattgttgaacttggagttaaagtgcgcgcaaatgatgaatgcagtggaagaagg |
130 |
Q |
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| T |
25612416 |
gtcttgtgcatattaactgggcatgact--ttcaaaagtgtggttcattgttcaacttggattttaagtgcgcacgaatgatgaatacagtggaagaagg |
25612319 |
T |
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| Q |
131 |
gttgcatatgttcaatgataggggtgatcttaaaattttctactggtttatttcgtagagtttgtcaattctagtgtcctatcagtgggtgtgggtggga |
230 |
Q |
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| T |
25612318 |
gttgcatatgttcaatgataggagtgatcttaaaattttctactggtttatttgatagagtttgtcaattctagtgtcctatcagtgggtgtgggtggga |
25612219 |
T |
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| Q |
231 |
tttgcttatgtagctatgtagtacactttgatatatcatttactgtatattaatattaacatatcctatgcta |
303 |
Q |
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| T |
25612218 |
tttgcttatgtagctatgtagtacactttgatatatcatttactgtatattaatattaacatatcctctgcta |
25612146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 302
Target Start/End: Original strand, 25615809 - 25616088
Alignment:
| Q |
21 |
tttatcaattgtcttgtgcatatcaactgggtatgactgtttcataagtgtggttcattgttgaacttggagttaaagtgcgcgcaaatgatgaatgcag |
120 |
Q |
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| T |
25615809 |
tttatcaattgtcttgtgcatatcaactgggtatgactgtttcaaaagtatggttcattgttgaacttggagttaaagtgcgcgcaaatgatgaatgcag |
25615908 |
T |
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| Q |
121 |
tggaagaagggttgcatatgttcaatgataggggtgatcttaaaattttctactggtttatttcgtagagtttgtcaattctagtgtcctatcagtgggt |
220 |
Q |
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| T |
25615909 |
tggaagaagggtggcatatgcttaatgataggagtgatcttaaaatattctactggtttatttcatagagttcgacaattctagtgtcctatcggtgggt |
25616008 |
T |
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| Q |
221 |
gtgggtgggatttgcttatgtagctatgtagtacactttgatatatcatttactgtatattaatattaacatatcctatgct |
302 |
Q |
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|||| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||| |||||| |||| |
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| T |
25616009 |
gtggatgggatttgcttatgtaattatgcagtacactttgatatatcatttac--tatattaatagtaacgtatcctgtgct |
25616088 |
T |
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