View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15348_high_9 (Length: 288)
Name: NF15348_high_9
Description: NF15348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15348_high_9 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 5662643 - 5662929
Alignment:
| Q |
1 |
cagttgtggtccaaaattttggaatcaatggaacagacaaatttgatgccattattttgtattaagcttcaatactttagactttcctcgcgccaaccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5662643 |
cagttgtggtccaaaattttggaatcaatggaacagacaaatttgatgtcattattttgtattaagcttcaatactttagactttcctcgtaccaaccta |
5662742 |
T |
|
| Q |
101 |
ctttatacagaaattttttcatgctgcatgtctccatttttatttattgactgggcttgtactctatctgaaattgagtattttttgccataggtttgcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5662743 |
ctttatacagaaattttttcatgctgcatgtctccatttttatttattgactgggcttgaactctatctgaaattgagtattttttgccataggtttg-c |
5662841 |
T |
|
| Q |
201 |
gacattagtttaacttgaatttaagaggatcaaactcttaaacacatgaactccactattgcattcttagttttgggtctgaactcaa |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
5662842 |
gacattagtttaacttgaatttaagaggatcaaactcttaaacacatgaactcctctattgcattcttagttttgggtttgaactcaa |
5662929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 123 - 288
Target Start/End: Original strand, 5664373 - 5664537
Alignment:
| Q |
123 |
gctgcatgtctccatttttatttattgactgggcttgtactctatctgaaattgagtattttttgccataggtttgccgacattagtttaacttgaattt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5664373 |
gctgcatgtctccatttttatttattgaccgggcttgtactctatttgaaattgagtcttttttgccataggtttgg-gacattagtttaacttgaattt |
5664471 |
T |
|
| Q |
223 |
aagaggatcaaactcttaaacacatgaactccactattgcattcttagttttgggtctgaactcaa |
288 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
5664472 |
aagaggatcaaactcttaaacacctgaactcctctattgcattcttagttttgggtttgaactcaa |
5664537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 130 - 288
Target Start/End: Complemental strand, 24853885 - 24853727
Alignment:
| Q |
130 |
gtctccatttttatttattgactgggcttgtactctatctgaaattgagtattttttgccataggtttgccgacattagtttaacttgaatttaagagga |
229 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||| |||||| || ||||| ||||||||| ||||||||||| |||| || |||||||| |
|
|
| T |
24853885 |
gtctccatttttatttattgcctggacttgtactctatctgaacttgagtcttatttgcaataggtttg-cgacattagttggacttaaacttaagaggg |
24853787 |
T |
|
| Q |
230 |
tcaaactcttaaac-acatgaactccactattgcattcttagttttgggtctgaactcaa |
288 |
Q |
| |
|
| | |||| | | |||||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
24853786 |
ttgggttgttaagcttcctgaactcctctattgccttcttagttttgggtttgaactcaa |
24853727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 288
Target Start/End: Original strand, 6824591 - 6824749
Alignment:
| Q |
130 |
gtctccatttttatttattgactgggcttgtactctatctgaaattgagtattttttgccataggtttgccgacattagtttaacttgaatttaagagga |
229 |
Q |
| |
|
||||||||||| |||||||| |||| ||||| ||||||||||| ||||| ||| || || |||||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
6824591 |
gtctccattttaatttattgtctggacttgtgctctatctgaatttgagcattattcgctataggttt-ttgacattagttggacttgaacttaagagga |
6824689 |
T |
|
| Q |
230 |
tcaaactcttaaac-acatgaactccactattgcattcttagttttgggtctgaactcaa |
288 |
Q |
| |
|
|| || ||| | || |||||||| ||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
6824690 |
tcggcctgttaggctacctgaactcctctattgccttcttagttttaggtttgaactcaa |
6824749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 12738738 - 12738638
Alignment:
| Q |
130 |
gtctccatttttatttattgactgggcttgtactctatctgaaattgagtattttttgccataggtttgccgacattagtttaacttgaatttaagagga |
229 |
Q |
| |
|
||||||||||| |||||||| |||| ||||| ||||||| ||| |||||| || || |||||||||||| |||||||||| ||| |||| ||||||||| |
|
|
| T |
12738738 |
gtctccattttcatttattgcctggacttgtgctctatcagaacttgagtcttattcgccataggtttg-agacattagttaaacatgaacttaagagga |
12738640 |
T |
|
| Q |
230 |
tc |
231 |
Q |
| |
|
|| |
|
|
| T |
12738639 |
tc |
12738638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 22056215 - 22056257
Alignment:
| Q |
130 |
gtctccatttttatttattgactgggcttgtactctatctgaa |
172 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
22056215 |
gtctccctttttatttattgcctgggcttgtgctctatctgaa |
22056257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University