View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15348_low_1 (Length: 1014)

Name: NF15348_low_1
Description: NF15348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15348_low_1
NF15348_low_1
[»] chr6 (1 HSPs)
chr6 (1-705)||(9488482-9489186)


Alignment Details
Target: chr6 (Bit Score: 657; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 1 - 705
Target Start/End: Original strand, 9488482 - 9489186
Alignment:
Q  1 atcgaacagttgtggatgaatcctgcaaatgcgcgaacagaaagggaaagacgaagagaaaaaagagacattaaaatgctgcaggccaaaatataaacag 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9488482 atcgaacagttgtggaagaatcctgcaaatgcgcgaacagaaagggaaagacgaagagaaaaaagagacattaaaatgctgcaggccaaaatataaacag 9488581  T
Q  101 ataatcacgagcaccggacaatccaccattgtcatcaaaattgtcatgctcaagtttggatacggaagggaaagaaagatcggtgacaatgaagcaatta 200  Q
    ||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9488582 ataatcacgagcaccggacaacccactatcgtcatcaaaattgtcatgctcaagtttggatacggaagggaaagaaagatcggtgacaatgaagcaatta 9488681  T
Q  201 acatagatggtgaaacctgacgttacttagatgatagcagaaacaaaagaaagcacaaacctggtttgagtcgtataggccaagccaagtgcagaaaaga 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9488682 acatcgatggtgaaacctgacgttacttagatgatagcagaaacaaaagaaagcacaaacctggtttgagtcgtataggccaagccaagtgcagaaaaga 9488781  T
Q  301 ttctgaccaccgtgcagatttgggtcacgtgcatgtcccaatatccaccgctactgccatggcgccagagaaaatgtgcagcagagaaatctaaggagac 400  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9488782 ttctgaccaccgtgcagatttgggtcacgtgcatgtccgaatatccaccgctactgccatggcgccagagaaaatgtgtagcagagaaatctaaggagac 9488881  T
Q  401 aaaagcttgggtaaaccaactcaatgaccagcttcagaaccgcgagttcgaagaagccaaaaaatagaacatttgatctaggagcattcattttttctac 500  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9488882 aaaagcttgggtaaaccaacccaatgaccagcttcagaaccgcgagttcgaagaagccaaaaaatagaacatttgatctaggagcattcattttttctac 9488981  T
Q  501 aatgtgtttctttcaccttcaggacaaagtgaagcttttgcgatgagtattgttagttagttcaatagacaatgtatttgtgtgtttatgaatcgtttta 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  9488982 aatgtgtttctttcaccttcaggacaaagtgaagcttttgcgatgagtattgttagtaagttcaatagacaatgtatttgtgtgtttaggaatcgtttta 9489081  T
Q  601 aatagaataagggtgagaaaacagattctctaactcctagaggatgattatttcccgcggttagcatttatgttttccgacagtttattttgtgtctttt 700  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9489082 aatagaataagggtgagaaaacagattctctaactcctagaggttgattatttccagcggttagcatttatgttttccgacagtttattttgtgtctttt 9489181  T
Q  701 gtaac 705  Q
    |||||    
T  9489182 gtaac 9489186  T

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