View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15348_low_11 (Length: 248)

Name: NF15348_low_11
Description: NF15348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15348_low_11
NF15348_low_11
[»] chr8 (3 HSPs)
chr8 (50-232)||(13476773-13476955)
chr8 (1-55)||(13476692-13476746)
chr8 (64-211)||(24944974-24945121)
[»] chr1 (2 HSPs)
chr1 (63-209)||(38761016-38761163)
chr1 (85-142)||(50109068-50109125)
[»] chr5 (2 HSPs)
chr5 (63-232)||(7509935-7510109)
chr5 (82-152)||(32233005-32233075)
[»] chr3 (4 HSPs)
chr3 (60-172)||(11456683-11456795)
chr3 (63-152)||(14567827-14567916)
chr3 (90-139)||(20029714-20029763)
chr3 (94-152)||(11414572-11414630)
[»] chr7 (1 HSPs)
chr7 (63-130)||(29428892-29428959)
[»] chr4 (1 HSPs)
chr4 (60-107)||(30258411-30258458)
[»] chr6 (2 HSPs)
chr6 (93-172)||(19694597-19694676)
chr6 (63-152)||(7365111-7365200)
[»] scaffold0004 (1 HSPs)
scaffold0004 (75-139)||(90383-90445)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 13476773 - 13476955
Alignment:
Q  50 tgtaatgcattgagatggaatgaagtagtaattaattatgtttcattgtttggatttgttaaaaatgaatggattggaatggtacataatggagctcatt 149  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13476773 tgtaatgcagtgagatggaatgaagtagtaattaattatgtttcattgtttggatttgttaaaaatgaatggagtggaatggtacataatggagctcatt 13476872  T
Q  150 ccaccctattctatcaaatcctttgatattcttttccctcaatttaaggtgtatctaatggagtggaactttgttattaaaat 232  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13476873 ccaccctattctatcaaatccttcgatatttttttccctcaatttaaggtgtatctaatggagtggaactttattattaaaat 13476955  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13476692 - 13476746
Alignment:
Q  1 ccgcccatggagataaatgatacaaatttcatggtaaattgttaacccttgtaat 55  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13476692 ccgcccatggagataaatgatacaaattttatggtaaattgttaacccttgtaat 13476746  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 24944974 - 24945121
Alignment:
Q  64 atggaatgaagtagtaattaattatgtttcattgtttggatttgttaaaaatgaatggattggaatggtacataatggagctcattccaccctattctat 163  Q
    |||||||| ||| |||  ||||||| || |||||||||||||||  |||| ||| | || |||||||| | | |||||| ||||||||| || || | |     
T  24944974 atggaatggagtggtacataattatattccattgtttggatttgcaaaaagtgactcgagtggaatggaatacaatggaactcattccatccaataccac 24945073  T
Q  164 caaatcctttgatattcttttccctcaatttaaggtgtatctaatgga 211  Q
    |||| ||||  || ||| || ||| |||||||||||||||| ||||||    
T  24945074 caaaaccttcaattttcattccccccaatttaaggtgtatcgaatgga 24945121  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 38761163 - 38761016
Alignment:
Q  63 gatggaatgaagtagtaattaattatgtttcattgtttggatttgttaaaaatgaatggattggaatggtacataatggagctcattccaccctattcta 162  Q
    |||| ||| |||| |||||||||||| ||  ||||||||||||||||||||||||||||| |||||||| | |||||||| || |||| |  | |||| |    
T  38761163 gatgaaataaagtggtaattaattatattctattgtttggatttgttaaaaatgaatggagtggaatggaaaataatggaacttattctattccattcca 38761064  T
Q  163 tcaaatcctttgatattcttttccct-caatttaaggtgtatctaatg 209  Q
    | |||||||| ||||||||||||||| |||||||||||||||| ||||    
T  38761063 ttaaatccttcgatattcttttccctccaatttaaggtgtatccaatg 38761016  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 50109125 - 50109068
Alignment:
Q  85 ttatgtttcattgtttggatttgttaaaaatgaatggattggaatggtacataatgga 142  Q
    ||||||| |||||||||||||||| | ||||||||||| |||||||| |||| |||||    
T  50109125 ttatgttccattgtttggatttgtaagaaatgaatggagtggaatggaacatgatgga 50109068  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 232
Target Start/End: Complemental strand, 7510109 - 7509935
Alignment:
Q  63 gatggaatgaagtagtaattaattatgtttcattgtttggatttgttaaaaatgaatggattggaatgg-----tacataatggagctcattccacccta 157  Q
    ||||||||| | | |||| |||||||||| |||| |||| |||| ||||||||||||||| ||||||||     ||||||||||| ||||||||| |  |    
T  7510109 gatggaatggaatggtaactaattatgttccattatttgaatttattaaaaatgaatggaatggaatggaatgatacataatggaactcattccatctca 7510010  T
Q  158 ttctatcaaatcctttgatattcttttccctcaatttaaggtgtatctaatggagtggaactttgttattaaaat 232  Q
    ||  |||||||||||  |||||||||||||||||||| ||||||||| |||| | ||||||||| | ||||||||    
T  7510009 tttcatcaaatccttccatattcttttccctcaatttgaggtgtatccaatgaaatggaactttataattaaaat 7509935  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 32233005 - 32233075
Alignment:
Q  82 taattatgtttcattgtttggatttgttaaaaatgaatggattggaatggtacataatggagctcattcca 152  Q
    ||||||| || |||||||||||||||  |||| |||||||| |||||||| | | |||||| |||||||||    
T  32233005 taattatattccattgtttggatttgcaaaaagtgaatggagtggaatggaatacaatggaactcattcca 32233075  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 172
Target Start/End: Complemental strand, 11456795 - 11456683
Alignment:
Q  60 tgagatggaatgaagtagtaattaattatgtttcattgtttggatttgttaaaaatgaatggattggaatggtacataatggagctcattccaccctatt 159  Q
    |||||||||||||||| |||| |||||| |||  ||||||||||||||| ||||  | ||||| ||||||||||||||| ||| |||||| || || |||    
T  11456795 tgagatggaatgaagtggtaactaattaagttcaattgtttggatttgtaaaaacaggatggagtggaatggtacataacggaactcatttcatcccatt 11456696  T
Q  160 ctatcaaatcctt 172  Q
    | |||| ||||||    
T  11456695 ccatcatatcctt 11456683  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 14567827 - 14567916
Alignment:
Q  63 gatggaatgaagtagtaattaattatgtttcattgtttggatttgttaaaaatgaatggattggaatggtacataatggagctcattcca 152  Q
    ||||||||| ||| |||  ||||||| || |||||||||||||||  |||| |||||||| |||||||| | | |||||| |||||||||    
T  14567827 gatggaatggagtggtacataattatattccattgtttggatttgcaaaaagtgaatggagtggaatggaatacaatggaactcattcca 14567916  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 20029763 - 20029714
Alignment:
Q  90 tttcattgtttggatttgttaaaaatgaatggattggaatggtacataat 139  Q
    ||||||||||||||||| ||||||||||||||| | |||||| |||||||    
T  20029763 tttcattgtttggattttttaaaaatgaatggaatagaatggaacataat 20029714  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 11414572 - 11414630
Alignment:
Q  94 attgtttggatttgttaaaaatgaatggattggaatggtacataatggagctcattcca 152  Q
    ||||||||||||||| || | ||||| || |||||||| |||||||||||| |||||||    
T  11414572 attgtttggatttgtaaatagtgaatagaatggaatggaacataatggagcccattcca 11414630  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 29428892 - 29428959
Alignment:
Q  63 gatggaatgaagtagtaattaattatgtttcattgtttggatttgttaaaaatgaatggattggaatg 130  Q
    ||||||||||||| |||   | ||||||| |||||||||||||||| ||||||||||||| |||||||    
T  29428892 gatggaatgaagtggtatggagttatgttccattgtttggatttgtaaaaaatgaatggaatggaatg 29428959  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 30258458 - 30258411
Alignment:
Q  60 tgagatggaatgaagtagtaattaattatgtttcattgtttggatttg 107  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  30258458 tgagatggaatgaagtggtaattaattagatttcattgtttggatttg 30258411  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 19694676 - 19694597
Alignment:
Q  93 cattgtttggatttgttaaaaatgaatggattggaatggtacataatggagctcattccaccctattctatcaaatcctt 172  Q
    |||||||||||||||  |||||| ||||||  ||||||| ||||||||||   ||||||| || |||| |||||||||||    
T  19694676 cattgtttggatttgcaaaaaattaatggaagggaatggaacataatggaatccattccatccaattccatcaaatcctt 19694597  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 7365200 - 7365111
Alignment:
Q  63 gatggaatgaagtagtaattaattatgtttcattgtttggatttgttaaaaatgaatggattggaatggtacataatggagctcattcca 152  Q
    ||||||||| ||| |||  ||||||| || |||||||||||||||  |||| |||||||| ||| |||| | | |||||| |||||||||    
T  7365200 gatggaatggagtggtacataattatattccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggatctcattcca 7365111  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 90383 - 90445
Alignment:
Q  75 tagtaattaattatgtttcattgtttggatttgttaaaaatgaatggattggaatggtacataat 139  Q
    |||||| ||||||| || |||||||| |||||||||||||||||  || ||||||||||| ||||    
T  90383 tagtaactaattatattccattgtttagatttgttaaaaatgaa--gagtggaatggtacgtaat 90445  T

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