View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15349_high_1 (Length: 542)
Name: NF15349_high_1
Description: NF15349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15349_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 7 - 432
Target Start/End: Original strand, 4770586 - 4771012
Alignment:
| Q |
7 |
tctgttgggattgaatatccttttcttgcttcatctgcannnnnnnncaaatgattcacttgcctgaaaacctcggctagtaaagttgctttgtccatct |
106 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||||||| |||||| ||||||||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
4770586 |
tctgttggaattgaataacctttgcttgcttcatctgcattttttttcaaatgcttcacttgcctaataacctcagctagtaaagttgctttgtccatct |
4770685 |
T |
|
| Q |
107 |
ataagaatatcatcagcaccattaataacagtatgtacatatgcgaaactatgacacattgacaccgaaatggacatcgtaaatgacacatagacatcac |
206 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4770686 |
ataagaatatcatcagcaacattaataacagtatgtacatatgcgaaactatgacacattgacaccgaaatggacatcataaataacacatagacatcac |
4770785 |
T |
|
| Q |
207 |
taggtcgtatatcctgtcttattaaatgtattgtttttgttttaaggattattaaatggttggttgcctaattccttcatcattggtcaggtaaagttat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4770786 |
taggtcgtatatcctgtcttattaaatgtattgtttttgttttaaggattattaaatggttggttgcctaattccttcatcattggtcaggtaaagttat |
4770885 |
T |
|
| Q |
307 |
tttctagacttagacccaccaaaacaaataaattaatactagtagtaaaactgcataaactatttgaatagcttaaccagctgttgacagctattaataa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4770886 |
tttctagacttagacccaccaaaacaaataaattaatactagtagtaaaactgcataaactatttgaatagcttaaccagctgttgacagctattaataa |
4770985 |
T |
|
| Q |
407 |
aaac-ttgagaaagaatgatttgttga |
432 |
Q |
| |
|
|||| |||||||||||| ||||||||| |
|
|
| T |
4770986 |
aaacattgagaaagaattatttgttga |
4771012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 430 - 536
Target Start/End: Original strand, 4771033 - 4771143
Alignment:
| Q |
430 |
tgatgtggagtgtgggcccacaactaagaatcatttgttatttatatattat----tgaataataaatgaaataatcttagtttgggaccatcgaagata |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4771033 |
tgatgtggagtgtgggcccacaactaagaatcatttgttatttatttattattgaatgaataataaatgaaataatcttagtttgggaccatcgaagata |
4771132 |
T |
|
| Q |
526 |
agactgcaaaa |
536 |
Q |
| |
|
| |||||||| |
|
|
| T |
4771133 |
aatctgcaaaa |
4771143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University