View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15349_high_13 (Length: 223)
Name: NF15349_high_13
Description: NF15349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15349_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 31079057 - 31078867
Alignment:
| Q |
15 |
gatgaaaggagaatgat-agagatacaagtgagagtgacgatgaacaactatggagagaaggaggatgatgagtagtaatcccatgatttttcacggttt |
113 |
Q |
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| T |
31079057 |
gatgaaagaagcatgatcagagatacaagtgagagtgacgatgaacaactatggagagaaggaggatgatcagtagtaatcccatgatttttcacagttt |
31078958 |
T |
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| Q |
114 |
tgagagagaggaaacgcaaaggtcgcatgacctaactatgctgatttctaaattctaaccgagagttaacagaatgtaacagaggggaggt |
204 |
Q |
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| T |
31078957 |
tgagagagaggaaacgcaaaggtcgcatgacctaactatgctgatttctaaattctaacggagagttaacataatgtaacagaggggaggt |
31078867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 9162361 - 9162297
Alignment:
| Q |
140 |
atgacctaactatgctgatttctaaattctaaccgagagttaacagaatgtaacagaggggaggt |
204 |
Q |
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| T |
9162361 |
atgacctaattatgctaatttctaaattctaacggagagttaacagaatgcaacagaggggaggt |
9162297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 34 - 161
Target Start/End: Original strand, 7043943 - 7044072
Alignment:
| Q |
34 |
agatacaagtgagagtgacgatgaacaactatggagagaaggaggatgatgagtagta--atcccatgatttttcacggttttgagagagaggaaacgca |
131 |
Q |
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| T |
7043943 |
agatacaagtgacagtgaagatgaacaacgttggagagaaggaggatgatcagtagtagaatcgcataatttttggcggttttgagagagaggaaacgca |
7044042 |
T |
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| Q |
132 |
aaggtcgcatgacctaactatgctgatttc |
161 |
Q |
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| T |
7044043 |
aaggtcgcatgacctaattatgctgatttc |
7044072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 51488652 - 51488518
Alignment:
| Q |
32 |
agagatacaagtgagagtgacgatgaacaactatggagagaaggaggatgatgagtagta--atcccatgatttttcacggttttgagagagaggaaacg |
129 |
Q |
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|||||||||| |||| ||| ||||||||||||||||||||||||||| ||| ||| ||| ||| |||||||||| |||||||||||||||||||| | |
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| T |
51488652 |
agagatacaattgaggttgaagatgaacaactatggagagaaggaggacgatcagtggtagaatcgcatgatttttggcggttttgagagagaggaaaag |
51488553 |
T |
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| Q |
130 |
caaaggtcgcatgacctaactatgctgatttctaa |
164 |
Q |
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| T |
51488552 |
caaagatcgcatgacctaattatgttgatttctaa |
51488518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 54858200 - 54858306
Alignment:
| Q |
38 |
acaagtgagagtgacgatgaacaactatggagagaag----gaggatgatgagtagtaatcccatgatttttcacggttttgagagagaggaaacgcaaa |
133 |
Q |
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||||||||| |||| |||||||||||||||||||||| ||| || | | ||| |||| |||||||||| ||||||| ||||||||||||||| |
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| T |
54858200 |
acaagtgagggtgaagatgaacaactatggagagaagacaaaaggttgtttattag-aatcacatgatttttggcggtttt----gagaggaaacgcaaa |
54858294 |
T |
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| Q |
134 |
ggtcgcatgacc |
145 |
Q |
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| T |
54858295 |
ggtcgcatgacc |
54858306 |
T |
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