View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15349_high_2 (Length: 425)

Name: NF15349_high_2
Description: NF15349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15349_high_2
NF15349_high_2
[»] chr6 (5 HSPs)
chr6 (10-292)||(25003749-25004032)
chr6 (10-289)||(34635113-34635393)
chr6 (114-404)||(10752627-10752916)
chr6 (114-154)||(19814811-19814851)
chr6 (77-119)||(16110265-16110307)
[»] chr3 (10 HSPs)
chr3 (10-292)||(16473883-16474166)
chr3 (114-386)||(46405450-46405721)
chr3 (114-290)||(5025561-5025740)
chr3 (114-288)||(16974239-16974414)
chr3 (80-292)||(15997343-15997555)
chr3 (126-292)||(52642457-52642626)
chr3 (114-247)||(11969112-11969245)
chr3 (73-138)||(35409996-35410060)
chr3 (74-123)||(19545765-19545814)
chr3 (78-134)||(8376913-8376968)
[»] chr1 (10 HSPs)
chr1 (114-408)||(336886-337176)
chr1 (11-397)||(37668378-37668757)
chr1 (114-409)||(21265788-21266079)
chr1 (114-289)||(43409086-43409263)
chr1 (114-289)||(6834836-6835013)
chr1 (114-292)||(9538328-9538504)
chr1 (114-247)||(29387720-29387851)
chr1 (114-247)||(36075268-36075397)
chr1 (73-119)||(24274817-24274863)
chr1 (77-128)||(51444389-51444441)
[»] chr2 (7 HSPs)
chr2 (114-408)||(40446262-40446551)
chr2 (73-398)||(16132159-16132474)
chr2 (114-292)||(12775863-12776045)
chr2 (305-404)||(14489913-14490012)
chr2 (114-209)||(32736618-32736713)
chr2 (73-132)||(19710390-19710449)
chr2 (74-135)||(28502822-28502884)
[»] scaffold0618 (1 HSPs)
scaffold0618 (114-386)||(5068-5340)
[»] scaffold0657 (1 HSPs)
scaffold0657 (10-240)||(5429-5660)
[»] chr7 (8 HSPs)
chr7 (114-404)||(10290242-10290527)
chr7 (114-289)||(15874989-15875165)
chr7 (10-242)||(12197420-12197651)
chr7 (114-285)||(48655531-48655696)
chr7 (113-206)||(9741510-9741602)
chr7 (77-134)||(28386637-28386693)
chr7 (74-118)||(10531046-10531091)
chr7 (78-134)||(19633613-19633668)
[»] scaffold0413 (1 HSPs)
scaffold0413 (153-404)||(7658-7904)
[»] chr4 (7 HSPs)
chr4 (10-292)||(49496787-49497066)
chr4 (113-289)||(40457649-40457827)
chr4 (89-292)||(41947307-41947513)
chr4 (175-290)||(10345639-10345754)
chr4 (112-218)||(8362650-8362755)
chr4 (74-118)||(3294769-3294814)
chr4 (77-134)||(15424767-15424822)
[»] chr5 (6 HSPs)
chr5 (109-289)||(535756-535937)
chr5 (10-292)||(42859508-42859787)
chr5 (114-247)||(40686271-40686400)
chr5 (73-111)||(43065369-43065407)
chr5 (259-291)||(25668602-25668634)
chr5 (78-134)||(37807214-37807269)
[»] chr8 (6 HSPs)
chr8 (73-398)||(21232817-21233136)
chr8 (142-289)||(42078438-42078585)
chr8 (187-273)||(41162273-41162359)
chr8 (78-134)||(7094833-7094888)
chr8 (78-134)||(29821107-29821162)
chr8 (213-280)||(41959505-41959573)
[»] scaffold0807 (1 HSPs)
scaffold0807 (77-137)||(1190-1250)
[»] scaffold0042 (1 HSPs)
scaffold0042 (78-134)||(6581-6636)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 25003749 - 25004032
Alignment:
Q  10 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25003749 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 25003848  T
Q  110 agaatgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| |    
T  25003849 agaatgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttatatcatgtgcgagaaacct 25003948  T
Q  210 tacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttca-tttttattaatcaatttggtgtg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25003949 tacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcattttttattaatcaatttggtgtg 25004032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 34635113 - 34635393
Alignment:
Q  10 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34635113 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctggatttctagtttcgaggacgaaactattttaagggggta 34635212  T
Q  110 agaatgtaacatcccgatattttatatatgtatttttat-aaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaact 208  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| || ||||||||  ||||||||||||| ||||||||||    
T  34635213 agaatgtaacatcccgatattttatatatgtatttttttaaaataattttcttgacttgccatttggttgttcattaatttattttatgtgcgagaaact 34635312  T
Q  209 ttacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34635313 ttacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattgatcaatttggt 34635393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 114 - 404
Target Start/End: Complemental strand, 10752916 - 10752627
Alignment:
Q  114 tgtaacatcccgatattttatatatgta--tttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaacttta 211  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||||| |||||||||| |||||||| |||||| ||||||| | ||| |||||||    
T  10752916 tgtaacatcccaatattttatatatgtacttttttataaataattttcttgacttgccacttggttgttcagcaatttgttttatgtgtgagtaacttta 10752817  T
Q  212 caaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtgtgnnnnnnnnnnnntaggata 311  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||            |||||||    
T  10752816 caaaatcttgacattctttactttgatttattaattgaatctaatttcatctatttcatttttattaatcaatttggtgtg---acaaaaaaataggata 10752720  T
Q  312 attatttcttaaattatttatatttattctaataaaatcctttactgctgcatctttatttgtaacttattttaaaggtaatttttggtatta 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  10752719 attatttcttaaattatttatatttattctaataaaatcctttactgcggcatctttatttgtaacttattttaaagataatttttggtatta 10752627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 19814851 - 19814811
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaataa 154  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19814851 tgtaacatcccgatattttatatatgtatttttataaataa 19814811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 16110307 - 16110265
Alignment:
Q  77 tagtttcgaggacgaaactattttaagggggtaagaatgtaac 119  Q
    |||||| ||||||||||||||||||||||| ||| ||||||||    
T  16110307 tagtttagaggacgaaactattttaaggggataataatgtaac 16110265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 16473883 - 16474166
Alignment:
Q  10 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16473883 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 16473982  T
Q  110 agaatgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| |    
T  16473983 agaatgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttatatcatgtgcgagaaacct 16474082  T
Q  210 tacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttca-tttttattaatcaatttggtgtg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16474083 tacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcattttttattaatcaatttggtgtg 16474166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 114 - 386
Target Start/End: Complemental strand, 46405721 - 46405450
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttaca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46405721 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgtgcgagaaactttaca 46405622  T
Q  214 aaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtgtgnnnnnnnnnnnntaggataat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||            |||||||||    
T  46405621 aaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtatg-aaaaaaaaaagtaggataat 46405523  T
Q  314 tatttcttaaattatttatatttattctaataaaatcctttactgctgcatctttatttgtaacttattttaa 386  Q
    ||||||||| |||||||||||||||| ||||||||| |||| |||| ||||||||||||  ||||||||||||    
T  46405522 tatttcttagattatttatatttattttaataaaattctttgctgcggcatctttattttaaacttattttaa 46405450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 114 - 290
Target Start/End: Complemental strand, 5025740 - 5025561
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttaca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||    
T  5025740 tgtaacatcccgatattttatatatgtatttttataaataatttacttggcttgccacttagttgttcaacaatttatattatgtgcgagaaaccttaca 5025641  T
Q  214 aaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcat---ttttattaatcaatttggtg 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||    
T  5025640 aaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcattttttttattaatcactttggtg 5025561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 114 - 288
Target Start/End: Original strand, 16974239 - 16974414
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttat-aaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttac 212  Q
    ||||||||||| ||||||||||||||||||||| | ||||||| |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  16974239 tgtaacatcccaatattttatatatgtattttttttaaataatcttcttgacttgccacttagttgttcaacaatttattttatgtgcgataaactttac 16974338  T
Q  213 aaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttgg 288  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  16974339 aaaatcttgacattctttattttggtttatcaattgaatctgattccatctatttcatttttattaatcaatttgg 16974414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 80 - 292
Target Start/End: Complemental strand, 15997555 - 15997343
Alignment:
Q  80 tttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttatatatgtatttttat-aaataattttcttggcttgccacttagttg 178  Q
    |||||||||||||||||||||||| ||| || ||||||||  ||  |||||||||||| |||||||| | |||| |||| |||| |||| ||||||||||    
T  15997555 tttcgaggacgaaactattttaagaggggaataatgtaacgccctaatattttatatacgtattttttttaaattattt-cttgacttgtcacttagttg 15997457  T
Q  179 ttcaacaatttattttatgggcgagaaactttacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttatta 278  Q
    || | |||||||||||||  | |||||| || |||| ||||||  |||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  15997456 ttaagcaatttattttataagtgagaaatttcacaacatcttggtattccttactttagtttattaattgaatttgattccatctatttcatttttatta 15997357  T
Q  279 atcaatttggtgtg 292  Q
    ||||||||||||||    
T  15997356 atcaatttggtgtg 15997343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 126 - 292
Target Start/End: Complemental strand, 52642626 - 52642457
Alignment:
Q  126 atattttatatatgtatttttataaataattttcttgg--cttgccacttagttgttcaacaatttattttatgggcgagaaacttt-acaaaatcttga 222  Q
    ||||||||||||||||||||| ||||||||||| ||    |||||   |||||||||||||||||||||| ||| |||||||  ||| |||||||||||     
T  52642626 atattttatatatgtatttttttaaataatttttttttaccttgctgtttagttgttcaacaatttatttcatgtgcgagaagatttcacaaaatcttgg 52642527  T
Q  223 cattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtgtg 292  Q
    ||||| ||| | |||||||||||||  || |  |||| | || |||||||||||||||||||||||||||    
T  52642526 cattccttaatatggtttattaatttgattttgtttcttatagttcatttttattaatcaatttggtgtg 52642457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 11969245 - 11969112
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagtt-gt---tcaacaatttattttatgggcgagaaactt 209  Q
    |||||||||||||||||||||||||||||||||  |||||||||| ||   ||| ||||||||| ||   |||||||||||   |||| |||||||| ||    
T  11969245 tgtaacatcccgatattttatatatgtattttttaaaataatttt-ttaaattgtcacttagttagttactcaacaattta---tatgtgcgagaaattt 11969150  T
Q  210 tacaaaatcttgacattctttactttggtttattaatt 247  Q
     ||||||| |||| |||  |||||||||||||||||||    
T  11969149 cacaaaattttgatatttcttactttggtttattaatt 11969112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 35409996 - 35410060
Alignment:
Q  73 tttctagtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttatatat 138  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||  ||| |||||||||||||    
T  35409996 tttctagtttcgaggacgaaactattttaa-ggggtaataatgtaacgccccaatattttatatat 35410060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 19545814 - 19545765
Alignment:
Q  74 ttctagtttcgaggacgaaactattttaagggggtaagaatgtaacatcc 123  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  19545814 ttctagtttcgaggacgaaactattttaaagggataataatgtaacatcc 19545765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 8376913 - 8376968
Alignment:
Q  78 agtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttat 134  Q
    |||||||||||||||||||||||| | |||| ||||||||| |||||| ||||||||    
T  8376913 agtttcgaggacgaaactattttaggtgggt-agaatgtaagatcccggtattttat 8376968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 114 - 408
Target Start/End: Original strand, 336886 - 337176
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttaca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  336886 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgtgcgagaaactttaca 336985  T
Q  214 aaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtgtgnnnnnnnnnnnntaggataat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||    
T  336986 aaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtgtg------aaaaaataggataat 337079  T
Q  314 tatttcttaaattatttatatttattctaataaaatcctttac--tgctgcatctttatttgtaacttattttaaaggtaatttttggtattaaatt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  337080 tatttcttaaattatttatatttattctaataaaatcctttactgtgctgcatctttatttgtaacttattttaaaggtaatttttggtattaaatt 337176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 397
Target Start/End: Complemental strand, 37668757 - 37668378
Alignment:
Q  11 ttattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggtaa 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37668757 ttattctagcatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaa-ggggtaa 37668659  T
Q  111 gaatgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaacttt 210  Q
     |||||||||||  ||| ||||||| |||||||||||||||||| ||||||| |||||||| || ||| |||||||||||||||| | |||||||||||     
T  37668658 taatgtaacatcttgatcttttatacatgtatttttataaataactttcttgacttgccacctaattgctcaacaatttattttacgtgcgagaaacttc 37668559  T
Q  211 acaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtgtgnnnnnnnnnnnntaggat 310  Q
    |||||||||||  |||| |||||||||||||||||||   | |  | |||| || ||| |||||||||||||||||| ||||            ||||||    
T  37668558 acaaaatcttggtattccttactttggtttattaattaggttttctatcatatagttc-tttttattaatcaatttgttgtg-----gaaaaagtaggat 37668465  T
Q  311 aattatttcttaaattatttatatttattctaataaaatcctttactgctgcatctttatttgtaacttattttaaaggtaattttt 397  Q
    ||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||||||||||| ||||||||    
T  37668464 aattatttcttaaattatttatatttattctaataaaattccttgctgttgcatctttatttgtaacttattttaaagttaattttt 37668378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 114 - 409
Target Start/End: Complemental strand, 21266079 - 21265788
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttat-aaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttac 212  Q
    ||||||||||| ||||||||||||||||||||| | |||| |||||||||  ||| ||| ||||||||||||||||||||||||| |||||||||||  |    
T  21266079 tgtaacatcccaatattttatatatgtattttttttaaatgattttcttgagttgtcacctagttgttcaacaatttattttatgtgcgagaaacttcgc 21265980  T
Q  213 aaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtgtgnnnnnnnnnnnntaggataa 312  Q
    |||||||||  |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||            ||||||||    
T  21265979 aaaatcttggtattccttactttggtttattaattgaatttgatttcatctatttcatttttattaatcaatttggtgtg-----acaaaaataggataa 21265885  T
Q  313 ttatttcttaaattatttatatttattctaataaaatcctttactgctgcatctttatttgtaacttattttaaaggtaatttttggtattaaattt 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21265884 ttatttcttaaattatttatatttattctaataaaatcctttactgctgcatctttatttgtaacttattttaaaggtaatttttggtattatattt 21265788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 114 - 289
Target Start/End: Complemental strand, 43409263 - 43409086
Alignment:
Q  114 tgtaacatcccgatattttatatatgtattttt-ataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttac 212  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| ||| ||||| ||||||||| ||||    
T  43409263 tgtaacatcccgatattttatatatgtattttttataaataattttcttggcttgccacttaattattcaacaatctatattatgtgcgagaaaccttac 43409164  T
Q  213 aaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcat-ttttattaatcaatttggt 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43409163 aaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcattttttattaatcaatttggt 43409086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 114 - 289
Target Start/End: Original strand, 6834836 - 6835013
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttat--aaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaacttta 211  Q
    ||||||||||| ||||||||||||||||||||| |  |||||||||||||  ||||||| || ||||||||  ||||||||||||| |||||||||||||    
T  6834836 tgtaacatcccaatattttatatatgtatttttttttaaataattttctttacttgccatttggttgttcattaatttattttatgtgcgagaaacttta 6834935  T
Q  212 caaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggt 289  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6834936 caaaatcttcacattctttactttggtttattaattgaatctgatttcatctatttaatttttattaatcaatttggt 6835013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 114 - 292
Target Start/End: Complemental strand, 9538504 - 9538328
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttaca 213  Q
    ||||||||||| |||||||||||||||| |||||  ||| ||||||||| |||| |||||||||| |||||||||||||||||| |||| |   ||||||    
T  9538504 tgtaacatcccaatattttatatatgtaatttta--aatgattttcttgacttgtcacttagttggtcaacaatttattttatgtgcgaaattttttaca 9538407  T
Q  214 aaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtgtg 292  Q
    |||||||||||||| |||| || | |||||||||  || |  |||||| || |||||||||| ||||||||||||||||    
T  9538406 aaatcttgacattccttacgtttggttattaattagattttctttcatatagttcatttttaataatcaatttggtgtg 9538328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 29387720 - 29387851
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttaca 213  Q
    ||||||||||| |||||||||||||||| |||||  ||| | ||||| | |||| |||||||||| |||||||||||||||||| |||||||| ||||||    
T  29387720 tgtaacatcccaatattttatatatgtaatttta--aatgactttctcgacttgtcacttagttggtcaacaatttattttatgtgcgagaaattttaca 29387817  T
Q  214 aaatcttgacattctttactttggtttattaatt 247  Q
    |||||||| ||||| ||||||| | |||||||||    
T  29387818 aaatcttggcattccttacttttggttattaatt 29387851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 36075268 - 36075397
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttaca 213  Q
    ||||||||||| |||||||||||||||||||||| |||| ||||||||   ||| |||||||||| |||||||||||   |||| |||||||| || |||    
T  36075268 tgtaacatcccaatattttatatatgtattttta-aaatgattttcttaaattgtcacttagttgctcaacaattta---tatgtgcgagaaatttcaca 36075363  T
Q  214 aaatcttgacattctttactttggtttattaatt 247  Q
    | |||||| ||||| |||||||||||||||||||    
T  36075364 acatcttggcattccttactttggtttattaatt 36075397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 24274817 - 24274863
Alignment:
Q  73 tttctagtttcgaggacgaaactattttaagggggtaagaatgtaac 119  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  24274817 tttctagtttcgaggacgaaactattttaagggggtaataatgtaac 24274863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 51444441 - 51444389
Alignment:
Q  77 tagtttcgaggacgaaactatttt-aagggggtaagaatgtaacatcccgata 128  Q
    |||||||| |||||||| |||||| |||||||||| |||||||||||||||||    
T  51444441 tagtttcggggacgaaattatttttaagggggtaataatgtaacatcccgata 51444389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 114 - 408
Target Start/End: Original strand, 40446262 - 40446551
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttaca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40446262 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgtgcgagaaactttaca 40446361  T
Q  214 aaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtgtgnnnnnnnnnnnntaggataat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||    
T  40446362 aaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtgtg-----aaaaaaataggataat 40446456  T
Q  314 tatttcttaaattatttatatttattctaataaaatcctttac--tgctgcatctttatttgtaacttattttaaaggtaatttttggtattaaatt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  40446457 tatttcttaaattatttatatttattctaataaaatcctttactgtgctgcatctt--tttgtaacttattttaaaggtaatttttggtattaaatt 40446551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 73 - 398
Target Start/End: Complemental strand, 16132474 - 16132159
Alignment:
Q  73 tttctagtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccact 172  Q
    |||||||| | |||||||||||||||||||| |||||| ||||||||  ||| |||||||| |||||||||||||  ||| |||||||||  ||| |||     
T  16132474 tttctagtattgaggacgaaactattttaagagggtaataatgtaacgccccaatattttacatatgtattttta--aatgattttcttgagttgtcacc 16132377  T
Q  173 tagttgttcaacaatttattttatgggcgagaaactttacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcattt 272  Q
    || |||||||||||||||||||||| |||||||||||  ||||||||||  |||| ||||||||||| |||||||   | |  |||||| || ||| |||    
T  16132376 taattgttcaacaatttattttatgtgcgagaaacttcgcaaaatcttgctattccttactttggttcattaattaggttttctttcatatagttc-ttt 16132278  T
Q  273 ttattaatcaatttggtgtgnnnnnnnnnnnntaggataattatttcttaaattatttatatttattctaataaaatcctttactgctgcatctttattt 372  Q
    ||||||||||||||||||||            ||||  ||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  16132277 ttattaatcaatttggtgtg-----gtaaaagtagg--aattaattcttaaattatttatatttattctaataaaattctttgctgctgcatctttattt 16132185  T
Q  373 gtaacttattttaaaggtaatttttg 398  Q
    |||||||||||||||| |||||||||    
T  16132184 gtaacttattttaaagttaatttttg 16132159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 114 - 292
Target Start/End: Complemental strand, 12776045 - 12775863
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaa-taattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttac 212  Q
    ||||||||||| ||||||||||||||||||||| |||| |||| |||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||    
T  12776045 tgtaacatcccaatattttatatatgtatttttttaaaataatcttcttgactttccacttagctgttcaacaatttattttatgtgcgagaaactttac 12775946  T
Q  213 aaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcat---ttttattaatcaatttggtgtg 292  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||   |||| |||||||||||||||||    
T  12775945 aaaatcttgacattctttactttggtttatcaattgaatctgattccatctatttcatttttttttttaatcaatttggtgtg 12775863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 305 - 404
Target Start/End: Original strand, 14489913 - 14490012
Alignment:
Q  305 taggataattatttcttaaattatttatatttattctaataaaatcctttactgctgcatctttatttgtaacttattttaaaggtaatttttggtatta 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14489913 taggataattatttcttaaattatttatatttattctaataaaattctttcctgctgcatctttatttgtaacttattttaaaggtaatttttggtatta 14490012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 32736713 - 32736618
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactt 209  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  32736713 tgtaacatcccgaaattttatatatgtatttttataaataattttcttggcttgccacctagttgttcaacaatttattttatgtgcgagaaactt 32736618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 19710449 - 19710390
Alignment:
Q  73 tttctagtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatatttt 132  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||    
T  19710449 tttctagtttcgaggacgaaactattttaagggggtaataatgtaacaccccaatatttt 19710390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 28502884 - 28502822
Alignment:
Q  74 ttctagtttcgaggacgaaactatttt-aagggggtaagaatgtaacatcccgatattttata 135  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  28502884 ttctagtttcgaggatgaaactatttttaagggggtaataatgtaacatctcgatattttata 28502822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 114 - 386
Target Start/End: Original strand, 5068 - 5340
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttaca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5068 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgtgcgagaaactttaca 5167  T
Q  214 aaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtgtgnnnnnnnnnnnntaggataat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |             |||||||||    
T  5168 aaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtatagaaaaaaaaaagtaggataat 5267  T
Q  314 tatttcttaaattatttatatttattctaataaaatcctttactgctgcatctttatttgtaacttattttaa 386  Q
    ||||||||| |||||||||||||||| ||||||||| |||| |||| ||||||||||||  ||||||||||||    
T  5268 tatttcttagattatttatatttattttaataaaattctttgctgcggcatctttattttaaacttattttaa 5340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 5660 - 5429
Alignment:
Q  10 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5660 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgtatttctagtttcgaggacgaaactattttaagggggta 5561  T
Q  110 agaatgtaacatcccgatattttatatatgtatttt-tataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaact 208  Q
    |||||||||||||||||||||||||||||||||||| |  |||||||||||||| ||||||| || ||||||||  ||||||||||||| ||||||||||    
T  5560 agaatgtaacatcccgatattttatatatgtattttattaaaataattttcttgacttgccatttggttgttcattaatttattttatgtgcgagaaact 5461  T
Q  209 ttacaaaatcttgacattctttactttggttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  5460 ttacaaaatcttgacattctttactttggttt 5429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 114 - 404
Target Start/End: Complemental strand, 10290527 - 10290242
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttat-aaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttac 212  Q
    ||||||||||| ||||||||||||||| ||||| | |||| |||||||||  ||| ||| ||||||||||||||||||||||||| |||||||||||  |    
T  10290527 tgtaacatcccaatattttatatatgttttttttttaaatgattttcttgagttgtcacctagttgttcaacaatttattttatgtgcgagaaacttcgc 10290428  T
Q  213 aaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtgtgnnnnnnnnnnnntaggataa 312  Q
    |||||||||  |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||    
T  10290427 aaaatcttggtattccttactttggtt-attaattgaatctgatttcatctatttcatttttattaatcaatttggtgtg-----acaaaaataggataa 10290334  T
Q  313 ttatttcttaaattatttatatttattctaataaaatcctttactgctgcatctttatttgtaacttattttaaaggtaatttttggtatta 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10290333 ttatttcttaaattatttatatttattctaataaaatcctttactgctgcatctttatttgtaatttattttaaaggtaatttttggtatta 10290242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 114 - 289
Target Start/End: Complemental strand, 15875165 - 15874989
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaa-taattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttac 212  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| ||  |||||||  ||||||||||||| ||||||||||||||    
T  15875165 tgtaacatcccgatattttatatatgtatttttttaaaataattttcttgacttgccatttgattgttcattaatttattttatgtgcgagaaactttac 15875066  T
Q  213 aaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggt 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15875065 aaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggt 15874989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 12197651 - 12197420
Alignment:
Q  10 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 109  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||  || ||||||||||||| ||||||    
T  12197651 attattctagtatcctttgat-ttgtttttacgaagaaactctaccttaattagtattctgaatttctagtttcggagaagaaactattttaa-ggggta 12197554  T
Q  110 agaatgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccac---ttagttgttcaacaatttattttatgggcgagaaa 206  Q
    | ||||||||  ||| ||||||||||||||  ||||| | ||| || || ||| |||| |||   |||||||||||||||||||||||||  ||||||||    
T  12197553 ataatgtaacgccccaatattttatatatg--ttttttttaatgatatttttgacttgtcactaattagttgttcaacaatttattttatatgcgagaaa 12197456  T
Q  207 ctttacaaaatcttgacattctttactttggtttat 242  Q
    ||| ||||||||||| ||||| ||||||| ||||||    
T  12197455 cttcacaaaatcttggcattccttactttagtttat 12197420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 114 - 285
Target Start/End: Complemental strand, 48655696 - 48655531
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttaca 213  Q
    ||||||||||| ||| ||||||||||||| ||   |||| ||||||||| ||||  |||||||||||||||||||||||||||| |||||||| ||        
T  48655696 tgtaacatcccaataatttatatatgtatctt---aaatgattttcttgacttgtaacttagttgttcaacaatttattttatgtgcgagaaattt---c 48655603  T
Q  214 aaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatt 285  Q
    ||||||||  |||| |||||||||||||||||||  || |  |||||| || | ||||||||||||||||||    
T  48655602 aaatcttggtattccttactttggtttattaattagattttctttcatatagtgcatttttattaatcaatt 48655531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 9741510 - 9741602
Alignment:
Q  113 atgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttat-tttatgggcgagaaa 206  Q
    |||||||||||| ||||||||||||||||||||  ||||| ||||| ||| |||| ||||||||||||||||| ||||| |||||| ||||||||    
T  9741510 atgtaacatcccaatattttatatatgtatttt--taaatgatttttttgacttgtcacttagttgttcaacagtttatatttatgtgcgagaaa 9741602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 28386637 - 28386693
Alignment:
Q  77 tagtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttat 134  Q
    ||||||||||||||||||||||||| | |||| ||||||||| || ||||||||||||    
T  28386637 tagtttcgaggacgaaactattttaggtgggt-agaatgtaagattccgatattttat 28386693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 10531091 - 10531046
Alignment:
Q  74 ttctagtttcgaggacgaaacta-ttttaagggggtaagaatgtaa 118  Q
    ||||||||||||||||||||| | |||||||||||||| |||||||    
T  10531091 ttctagtttcgaggacgaaacaatttttaagggggtaataatgtaa 10531046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 19633668 - 19633613
Alignment:
Q  78 agtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttat 134  Q
    ||||| |||||||||||||||||| | |||| ||||||||| |||||| ||||||||    
T  19633668 agttttgaggacgaaactattttaggtgggt-agaatgtaagatcccggtattttat 19633613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 153 - 404
Target Start/End: Original strand, 7658 - 7904
Alignment:
Q  153 aattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttacaaaatcttgacattctttactttggtttattaattgaatc 252  Q
    ||||||||||  ||| ||| ||||||||||||||||||||||||| |||||||||||  ||||||||||  |||||||||||| ||||||||||||||||    
T  7658 aattttcttgagttgtcacctagttgttcaacaatttattttatgtgcgagaaacttcgcaaaatcttggtattctttactttagtttattaattgaatc 7757  T
Q  253 tgatttcatctatttcatttttattaatcaatttggtgtgnnnnnnnnnnnntaggataattatttcttaaattatttatatttattctaataaaatcct 352  Q
    ||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7758 tgatttcatctatttcatttttattaatcaatttggtgtg-----acaaaaataggataattatttcttaaattatttatatttattctaataaaatcct 7852  T
Q  353 ttactgctgcatctttatttgtaacttattttaaaggtaatttttggtatta 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7853 ttactgctgcatctttatttgtaacttattttaaaggtaatttttggtatta 7904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 49496787 - 49497066
Alignment:
Q  10 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 109  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  49496787 attattctagtatcctttgattttgtttttatgaagaaactctaccttaattagtcttatgaatttctagtttcgaggacgaaactattttaagggggta 49496886  T
Q  110 agaatgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactt 209  Q
    | |||||||||||||||||||||||||||||| || |   ||| ||||||||| |||| || ||||||| |||||||||||||||||| |||||||| ||    
T  49496887 ataatgtaacatcccgatattttatatatgtaattct---aatgattttcttgacttgtcatttagttggtcaacaatttattttatgtgcgagaaattt 49496983  T
Q  210 tacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggtgtg 292  Q
    |||||||||||| ||||| ||||||| | |||||||||   | |  |||||| || |||||||||| ||||||||||||||||    
T  49496984 tacaaaatcttggcattccttacttttggttattaattaggttttctttcatatagttcatttttaataatcaatttggtgtg 49497066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 113 - 289
Target Start/End: Original strand, 40457649 - 40457827
Alignment:
Q  113 atgtaacatcccgatattttatatatgtatttt-tataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaacttta 211  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| ||| ||||| ||||||||| |||    
T  40457649 atgtaacatcccgatattttatatatgtattttttataaataattttcttggcttgccacttaattattcaacaatctatattatgtgcgagaaacctta 40457748  T
Q  212 caaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttca-tttttattaatcaatttggt 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40457749 caaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcattttttattaatcaatttggt 40457827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 89 - 292
Target Start/End: Complemental strand, 41947513 - 41947307
Alignment:
Q  89 cgaaactattttaagggggtaagaatgtaacatcccgatattttatatatgtatttttat---aaataattttcttggcttgccacttagttgttcaaca 185  Q
    ||||||||||||||||| |||| ||||||||   || |||||||||||| |||||||| |   |||| ||||||||| |||| |||||||||||||||||    
T  41947513 cgaaactattttaagggagtaataatgtaacgctccaatattttatatacgtatttttttttaaaattattttcttgacttgtcacttagttgttcaaca 41947414  T
Q  186 atttattttatgggcgagaaactttacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatt 285  Q
    |||||||||||  | ||||||||| |||| |||||| ||| | |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||    
T  41947413 atttattttataagtgagaaacttcacaacatcttggcataccttactttgatttattaattgaatttgattccatctatttcatttttattaatcaatt 41947314  T
Q  286 tggtgtg 292  Q
    |||||||    
T  41947313 tggtgtg 41947307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 175 - 290
Target Start/End: Complemental strand, 10345754 - 10345639
Alignment:
Q  175 gttgttcaacaatttattttatgggcgagaaactttacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcattttt 274  Q
    |||||||||||||||||||| |  ||||||||||| |||| |||||| ||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  10345754 gttgttcaacaatttattttctaagcgagaaacttcacaacatcttggcattccttattttggtttattaattgaatttgattccatctatttcattttt 10345655  T
Q  275 attaatcaatttggtg 290  Q
    ||||||||||||||||    
T  10345654 attaatcaatttggtg 10345639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 8362650 - 8362755
Alignment:
Q  112 aatgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttat-tttatgggcgagaaacttt 210  Q
    ||||||||||||| ||||||||||||||||||||  ||||| ||||||||| |||| ||||||||||||||||| ||||| |||||| |||||||| ||     
T  8362650 aatgtaacatcccaatattttatatatgtatttt--taaatgattttcttgacttgtcacttagttgttcaacagtttatatttatgtgcgagaaatttc 8362747  T
Q  211 acaaaatc 218  Q
    ||||||||    
T  8362748 acaaaatc 8362755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 3294769 - 3294814
Alignment:
Q  74 ttctagtttcgaggacgaaactatt-ttaagggggtaagaatgtaa 118  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||||    
T  3294769 ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa 3294814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 15424767 - 15424822
Alignment:
Q  77 tagtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttat 134  Q
    ||||||||||||||||||||||||| | |||| ||||||||| |||||| ||||||||    
T  15424767 tagtttcgaggacgaaactattttaggtgggt-agaatgtaagatcccg-tattttat 15424822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 109 - 289
Target Start/End: Original strand, 535756 - 535937
Alignment:
Q  109 aagaatgtaacatcccgatattttatatatgtatttttataaa-taattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaac 207  Q
    |||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| || ||||||||  ||||||||||||| |||||||||    
T  535756 aagagtgtaacatcccgatattttatatatgtatttttttaaaataattttcttgacttgccatttggttgttcattaatttattttatgtgcgagaaac 535855  T
Q  208 tttacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  535856 tttacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttttattaatcaatttggt 535937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 42859508 - 42859787
Alignment:
Q  10 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttctagtttcgaggacgaaactattttaagggggta 109  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  42859508 attattctagtatcctttgat-ttgtttttatgaagaaactctaccttaattagttttctgaatttatagttttgaggacgaaactattttaagggggta 42859606  T
Q  110 agaatgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactt 209  Q
    | ||||||||  ||| ||||||||||||||  ||||  | ||| || || | | |||| |||||||||||||||||||||| |||||  |||||||||||    
T  42859607 ataatgtaacgccccaatattttatatatg--ttttgtttaatgatattttggacttgtcacttagttgttcaacaatttaatttatatgcgagaaactt 42859704  T
Q  210 tacaaaatcttgacattctttactttggtttatta-attgaatctgatttcatctatttcatttttattaatcaatttggtgtg 292  Q
     ||||||||||| ||||| ||| |||||||||| |  |  ||| | ||||||||||||| ||||||||||||||||||||||||    
T  42859705 cacaaaatcttggcattcctta-tttggtttatcacctataattttatttcatctattttatttttattaatcaatttggtgtg 42859787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 40686271 - 40686400
Alignment:
Q  114 tgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttaca 213  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||   ||  |||||||||| |||||||||||   |||| |||||||| || |||    
T  40686271 tgtaacatcccaatattttatatatgtattttt-taaatgattttcttaaattatcacttagttgctcaacaattta---tatgtgcgagaaatttcaca 40686366  T
Q  214 aaatcttgacattctttactttggtttattaatt 247  Q
    | |||||| ||||| ||| ||| |||||||||||    
T  40686367 acatcttggcattccttaatttagtttattaatt 40686400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 43065407 - 43065369
Alignment:
Q  73 tttctagtttcgaggacgaaactattttaagggggtaag 111  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  43065407 tttctagtttcgaggacgaaactattttaaagggataag 43065369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 25668602 - 25668634
Alignment:
Q  259 catctatttcatttttattaatcaatttggtgt 291  Q
    |||||| ||||||||||||||||||||||||||    
T  25668602 catctacttcatttttattaatcaatttggtgt 25668634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 37807269 - 37807214
Alignment:
Q  78 agtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttat 134  Q
    ||||| |||||||||||||||||| | |||| ||||||||| |||||| ||||||||    
T  37807269 agttttgaggacgaaactattttaggtgggt-agaatgtaagatcccggtattttat 37807214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 8e-68; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 73 - 398
Target Start/End: Complemental strand, 21233136 - 21232817
Alignment:
Q  73 tttctagtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttatatatgtatttttataaataattttcttggcttgccact 172  Q
    |||||| ||| |||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||  ||||| |||||||||  ||| |||     
T  21233136 tttctaattttgaggacgaaactattttaagtgggtaataatgtaacatcccaatattttatatatgtatttt--taaatgattttcttgagttgtcacc 21233039  T
Q  173 tagttgttcaacaatttattttatgggcgagaaactttacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcattt 272  Q
    |  |||||||||||||||||||||  |||||||||||| |||||||||   |||| ||||||||||| |||||||   | |  |||||| || |||||||    
T  21233038 tgattgttcaacaatttattttatatgcgagaaactttccaaaatcttagtattccttactttggttcattaattaggttttctttcatatagttcattt 21232939  T
Q  273 ttattaatcaatttggtgtgnnnnnnnnnnnntaggataattatttcttaaattatttata-tttattctaataaaatcctttactgctgcatctttatt 371  Q
    ||||||||||||||||||||            |||||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||    
T  21232938 ttattaatcaatttggtgtg-----gcaaaagtaggataattatttcttagattatttatattttattctaataaaattctttgctgctgcatctttatt 21232844  T
Q  372 tgtaacttattttaaaggtaatttttg 398  Q
    | ||||||||||||||| || ||||||    
T  21232843 tttaacttattttaaagttagtttttg 21232817  T

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Target: chr8; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 142 - 289
Target Start/End: Complemental strand, 42078585 - 42078438
Alignment:
Q  142 tttttataaataattttcttggcttgccacttagttgttcaacaatttattttatgggcgagaaactttacaaaatcttgacattctttactttggttta 241  Q
    ||||| ||||| ||||||||  |||| ||||||||||||||||||||||||||||  ||||||||||| |||| |||||| ||||| |||||||||||||    
T  42078585 tttttttaaattattttcttaacttgtcacttagttgttcaacaatttattttataagcgagaaacttcacaacatcttggcattccttactttggttta 42078486  T
Q  242 ttaattgaatctgatttcatctatttcatttttattaatcaatttggt 289  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  42078485 ttaattgaatttgattccatctatttcatttttattaatcaatttggt 42078438  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 41162273 - 41162359
Alignment:
Q  187 tttattttatgggcgagaaactttacaaaatcttgacattctttactttggtttattaattgaatctgatttcatctatttcatttt 273  Q
    ||||||||||  |||||||||||  ||| |||||  ||||| ||||||||||||||||||||||| ||||||||||||||| |||||    
T  41162273 tttattttataagcgagaaacttcgcaacatcttagcattccttactttggtttattaattgaatttgatttcatctattttatttt 41162359  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 7094888 - 7094833
Alignment:
Q  78 agtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttat 134  Q
    |||||||||||||||||||||||| | |||| ||||||||| |||||| ||||||||    
T  7094888 agtttcgaggacgaaactattttaggtgggt-agaatgtaagatcccggtattttat 7094833  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 29821107 - 29821162
Alignment:
Q  78 agtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttat 134  Q
    |||||||||||||||||||||||| |  ||| ||||||||| |||||||||||||||    
T  29821107 agtttcgaggacgaaactattttaggtaggt-agaatgtaagatcccgatattttat 29821162  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 41959573 - 41959505
Alignment:
Q  213 aaaatcttgacattctttactttggtttattaatt-gaatctgatttcatctatttcatttttattaat 280  Q
    ||||| ||||||||   |||||||||| ||||||| |||||| ||| ||||||||| ||||||||||||    
T  41959573 aaaatattgacatttcctactttggttaattaattagaatcttattccatctattttatttttattaat 41959505  T

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Target: scaffold0807 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 1250 - 1190
Alignment:
Q  77 tagtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttatata 137  Q
    ||||||||||||||||||| |||||||||||||| ||||||||  ||| | ||||||||||    
T  1250 tagtttcgaggacgaaactgttttaagggggtaataatgtaacgacccaaaattttatata 1190  T

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Target: scaffold0042 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 6636 - 6581
Alignment:
Q  78 agtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttat 134  Q
    ||||| |||||||||| ||||||| | ||||| |||||||| |||||||||||||||    
T  6636 agttttgaggacgaaaatattttaggtgggta-gaatgtaagatcccgatattttat 6581  T

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