View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15349_high_5 (Length: 338)
Name: NF15349_high_5
Description: NF15349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15349_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 29469682 - 29469456
Alignment:
| Q |
17 |
aatttgtaaataataaaagtagcttaccttcttcaataaaagataaaagtaactcactgtcgtcattctttacaacatgaaaaagagaaagaaaaataat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29469682 |
aatttgtaaataataaaagtagcttaccttcttcaataaaagataaaagtaatttattgtcgtcattctttgcaacatgaaaaagagaaagaaaaataat |
29469583 |
T |
|
| Q |
117 |
caaaacatgaacaaatttaataattatagccatgcatcacctctttgaatgtaacaaatgattttatcattttataatttatagagttggtcttctcctt |
216 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29469582 |
caaaacattaacaaatttgataattatagtcatgcatcccctctttgaatgtaacaaatgattttatcattttataatttatagagttggtcttctcctt |
29469483 |
T |
|
| Q |
217 |
aca-caacaaaataacttttagccctt |
242 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
29469482 |
acaccaacaaaataacttttagccctt |
29469456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 59 - 239
Target Start/End: Complemental strand, 29481517 - 29481336
Alignment:
| Q |
59 |
ataaaagtaactcactgtcgtcattctttacaacatgaaaaagagaaagaaaaataatcaaaacatgaacaaatttaataattatagccatgcatcacct |
158 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| ||||||| ||| ||| |
|
|
| T |
29481517 |
ataaaagtaacttaccatcgtcattctttacaacatgaaaaagagaaagaaatataatcaaaacatgaacaaacttgataattccagccatgtatcccct |
29481418 |
T |
|
| Q |
159 |
ctttgaatgtaacaaatgattttatcattttataatttatagagttggtcttctccttaca-caacaaaataacttttagcc |
239 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| |
|
|
| T |
29481417 |
ctttgcatgtaacaaatgattttatcattttataatttatagagttggcattctccttacaccaacaaaatagtttttagcc |
29481336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 29469418 - 29469369
Alignment:
| Q |
278 |
tcataaaattagaataattattgaatctctcttaactacattaaagtatt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29469418 |
tcataaaattagaataattattgaatctctcttaactacattaaagtatt |
29469369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 29481300 - 29481247
Alignment:
| Q |
274 |
cccttcataaaattagaataattattgaatctctcttaactacattaaagtatt |
327 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||| |||| |
|
|
| T |
29481300 |
cccttcataaaattagaataattatggaatctctctcaactacattaaattatt |
29481247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University