View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15349_high_7 (Length: 282)

Name: NF15349_high_7
Description: NF15349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15349_high_7
NF15349_high_7
[»] chr5 (1 HSPs)
chr5 (1-247)||(41968926-41969161)
[»] chr1 (2 HSPs)
chr1 (101-247)||(3722450-3722597)
chr1 (111-245)||(32953608-32953742)
[»] chr8 (2 HSPs)
chr8 (166-247)||(35739690-35739771)
chr8 (175-247)||(37080806-37080878)
[»] chr7 (1 HSPs)
chr7 (108-247)||(7805573-7805712)
[»] chr3 (1 HSPs)
chr3 (14-67)||(1236150-1236203)
[»] chr2 (1 HSPs)
chr2 (138-245)||(36033683-36033789)
[»] scaffold0011 (1 HSPs)
scaffold0011 (166-247)||(228870-228951)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 41969161 - 41968926
Alignment:
Q  1 ttttggatataagtttttcctttaaatatgtgaatcacaagtataatatttataaacttgatcaagggttttccgcgatttcgattgttatggatgctgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  41969161 ttttggatataagtttttcctttaaatatgtgaatcacaagtataatatttataaacttgatcaagggttttccgcgatttcgattgttaccggtgctgc 41969062  T
Q  101 caaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||    
T  41969061 caaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttctt-----------cttttccaatgtaacaatactc 41968973  T
Q  201 aagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa 247  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||    
T  41968972 aagcatggaaccacgaattcataaacttaaaaaatctcatctataaa 41968926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 101 - 247
Target Start/End: Original strand, 3722450 - 3722597
Alignment:
Q  101 caaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactc 200  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||  |||      
T  3722450 caaaacattgcacaattaccctcaccatttcctctcactcacctcacattattctttataggttcttctttctcacttcttttccaatgtcacggtaccg 3722549  T
Q  201 aagcatggaaccacaaattcataaac-ttaaaaaatctcatctctaaa 247  Q
    ||  |||||||||| ||||||||||| | |||||||||||||||||||    
T  3722550 aattatggaaccactaattcataaacataaaaaaatctcatctctaaa 3722597  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 245
Target Start/End: Complemental strand, 32953742 - 32953608
Alignment:
Q  111 cacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatggaa 210  Q
    |||||||||| |||||| |||||| |||||||| |||||||||| ||  ||||| | |||||| |||| |||| |||||| |||||| | || || | ||    
T  32953742 cacaattaccttcaccagttactctcactcaccccactttattctttccaggttttactttcttacttatttttcaatgtcacaatattgaaacaagcaa 32953643  T
Q  211 ccacaaattcataaacttaaaaaatctcatctcta 245  Q
    | || |||||||||||   ||||||||||||||||    
T  32953642 caacgaattcataaacaccaaaaatctcatctcta 32953608  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 35739771 - 35739690
Alignment:
Q  166 ttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa 247  Q
    |||||||| |||||||||||||||| |||  ||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  35739771 ttctttctaacttcttttccaatgtcacagaactgaagcatggaaccacaaattcataaacataaaaaatctcatctctaaa 35739690  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 37080806 - 37080878
Alignment:
Q  175 acttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa 247  Q
    |||||||||||| ||| |||||||| ||||| | ||||||||||||||||||   || |||||||||||||||    
T  37080806 acttcttttccattgtcacaatactgaagcaagcaaccacaaattcataaacaccaataatctcatctctaaa 37080878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 247
Target Start/End: Original strand, 7805573 - 7805712
Alignment:
Q  108 ttgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatg 207  Q
    |||||||||||||||||||| || |||  |||||||||||||||||  ||  |||||||||||||  |||||||||||||||| || ||||| ||||| |    
T  7805573 ttgcacaattaccctcaccactttctctaactcacctcactttattatttcgaggttcttctttcaaacttcttttccaatgtcacgatactgaagcaag 7805672  T
Q  208 gaaccacaaattcataaacttaaaaaatctcatctctaaa 247  Q
     ||| || |||||||||||   ||||||| ||||||||||    
T  7805673 caactacgaattcataaacaccaaaaatcccatctctaaa 7805712  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 1236203 - 1236150
Alignment:
Q  14 tttttcctttaaatatgtgaatcacaagtataatatttataaacttgatcaagg 67  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||    
T  1236203 tttttcctttaaacatgtgaatcacaagtataatatttattaacttgatgaagg 1236150  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 245
Target Start/End: Complemental strand, 36033789 - 36033683
Alignment:
Q  138 ctcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatct 237  Q
    |||||| |||||||||| ||  ||||||| ||| |||||||||||| |||||| ||| |||| ||||| | |||||| |||||||||||   ||||||||    
T  36033789 ctcaccccactttattctttccaggttctacttactcacttctttttcaatgtcacattactgaagcaagcaaccacgaattcataaac-acaaaaatct 36033691  T
Q  238 catctcta 245  Q
    ||||||||    
T  36033690 catctcta 36033683  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 228870 - 228951
Alignment:
Q  166 ttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa 247  Q
    |||||||||| |||||||||||||| ||  |||| ||||| | ||||||  ||||||||||   ||| ||||||||||||||    
T  228870 ttctttctcatttcttttccaatgtcactgtactaaagcaagcaaccacggattcataaacaccaaatatctcatctctaaa 228951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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