View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15349_low_1 (Length: 588)
Name: NF15349_low_1
Description: NF15349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15349_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 34 - 379
Target Start/End: Original strand, 43366671 - 43367016
Alignment:
| Q |
34 |
aaggtgagaacattgtttgattaccggaatgtgaaatggggattgctgatgagaatctaaacgagatttaaccaaatcattatcctgaaatacaatcaaa |
133 |
Q |
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| T |
43366671 |
aaggtgagaacattgtttgattaccggaatgtgaaatggggattgctgatgagaatctaaacgagatttaaccaaatcattatcctgaaatacaatcaaa |
43366770 |
T |
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| Q |
134 |
gttacacacagcagcagaatggaatgaggaatgtaattgaagtagaaggatgaagagcatttacaataaaaggggaaggagcgaagagagagagcatgat |
233 |
Q |
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| T |
43366771 |
gttacacacagcagcaaaatggaatgaggaatgtaattgaagtagaaggatgaagagcatttacaataaaaggggaaggagcgaagagagagagcatgat |
43366870 |
T |
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| Q |
234 |
gaaaagaaggagaaggcagacggagatggcggaaatgaggaggcggtgaatgagacgacggcggaggaaactggcaagaaggagtccgatgagtcttctg |
333 |
Q |
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| T |
43366871 |
gaaaagaaagagaaggcagacggagatggaggaaatgaggaggcgatgaatgagacgacggcggaggaaactggaaagaaggagtccgatgagtcttctg |
43366970 |
T |
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| Q |
334 |
gacttgtctgtcttctttctcttcactgatgatggtgtatgcatca |
379 |
Q |
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| T |
43366971 |
gacttgtctgtcttctttctcttcactgatgatggtttatgcatca |
43367016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 413 - 571
Target Start/End: Original strand, 43367042 - 43367214
Alignment:
| Q |
413 |
gaatgaatattaattacagtttggtgtatgtat--------atatgtgttagctagtgatgatattaatatgtaatgcatggagtaatgtaatgtacgtt |
504 |
Q |
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| T |
43367042 |
gaatgaatattaattacagtttggtgtatgtatgtatgtatatatgtgttagctagtgatgata---atatgtaatgcatggagtaatgtaatgtacgtt |
43367138 |
T |
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| Q |
505 |
attg---------attattataattgtgtttgcaattacagttacgacaaatgcatggaattagaggtagaagaag |
571 |
Q |
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| T |
43367139 |
attgattattattattattataattgtgtttgcaattacagttacgacaaatgcatggaattagaggtagaagaag |
43367214 |
T |
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