View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15349_low_12 (Length: 274)
Name: NF15349_low_12
Description: NF15349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15349_low_12 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 258
Target Start/End: Complemental strand, 11776131 - 11775894
Alignment:
| Q |
21 |
ggtgttgctcaaggaaatcctggccatgctgcttgtgggagcttttatgggaataccaatttagttttccttggtggctttgctatcaatcttggtatca |
120 |
Q |
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|||| |||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11776131 |
ggtgctgctcaaggaaatcctggccatgctgcttgtgggggcctttacaggaataccaatttagttttccttggtggctttgctatcaatcttggtatca |
11776032 |
T |
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| Q |
121 |
cttctgctttatgctcggagatcattggtgcaatggtggctataaaaatagcctatcataaaggttggttttccatgtggttggaaacagactcaattgt |
220 |
Q |
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| T |
11776031 |
cttctgctttatgcttagagatcattggtgcaatggtggctatagaaatagcctatcagaaaggttggttttccctatggttggaaacagactcaatggt |
11775932 |
T |
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| Q |
221 |
tgttttcttagctttcaagtcttctaagattgtccctt |
258 |
Q |
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| T |
11775931 |
tgttttcttagctttcaagtcttctaaggttgtccctt |
11775894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 28 - 255
Target Start/End: Complemental strand, 10806617 - 10806390
Alignment:
| Q |
28 |
ctcaaggaaatcctggccatgctgcttgtgggagcttttatgggaataccaatttagttttccttggtggctttgctatcaatcttggtatcacttctgc |
127 |
Q |
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| T |
10806617 |
ctcaaggaagtcctggccatgctgcttgtgggggactttatagaaatatcaactcagattttcttggtggttttgccatcaatcttggtatcacttctgc |
10806518 |
T |
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| Q |
128 |
tttatgctcggagatcattggtgcaatggtggctataaaaatagcctatcataaaggttggttttccatgtggttggaaacagactcaattgttgttttc |
227 |
Q |
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| T |
10806517 |
attatgctctgagcttattggtgcaatggtggccatagaaattgcctatcagaaaggatggatctctttttggttggaaacagattcaatgcttgtgttc |
10806418 |
T |
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| Q |
228 |
ttagctttcaagtcttctaagattgtcc |
255 |
Q |
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| T |
10806417 |
ttagccttcaagtgttctaagatagtcc |
10806390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 10810983 - 10810923
Alignment:
| Q |
198 |
tggttggaaacagactcaattgttgttttcttagctttcaagtcttctaagattgtccctt |
258 |
Q |
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| T |
10810983 |
tggttagaaacagattcaatgcttgtgttcttaaccttcaagtcttctaagatagtccctt |
10810923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 12304826 - 12304931
Alignment:
| Q |
83 |
agttttccttggtggctttgctatcaatcttggtatcacttctgctttatgctcggagatcattggtgcaatggtggctataaaaatagcctatcataaa |
182 |
Q |
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| T |
12304826 |
agttttccttggtggctttgcggttaatcttggtattacttcagctctctgctctgagctcattggcgcaatgcttgctattgaaattgcccatcataaa |
12304925 |
T |
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| Q |
183 |
ggttgg |
188 |
Q |
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| T |
12304926 |
ggttgg |
12304931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 35117 - 35012
Alignment:
| Q |
83 |
agttttccttggtggctttgctatcaatcttggtatcacttctgctttatgctcggagatcattggtgcaatggtggctataaaaatagcctatcataaa |
182 |
Q |
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| T |
35117 |
agttttccttggtggctttgcggttaatcttggtattacttcatctctctgctctgagctcattggcgcaatgcttgctattgaaattgcccatcataaa |
35018 |
T |
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| Q |
183 |
ggttgg |
188 |
Q |
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|||||| |
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| T |
35017 |
ggttgg |
35012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 45097136 - 45097100
Alignment:
| Q |
220 |
ttgttttcttagctttcaagtcttctaagattgtccc |
256 |
Q |
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| T |
45097136 |
ttgttttcttggctttcaagtcttctaaggttgtccc |
45097100 |
T |
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