View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15349_low_13 (Length: 268)
Name: NF15349_low_13
Description: NF15349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15349_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 5787754 - 5787510
Alignment:
| Q |
9 |
acatcatcatcatcaagaaaaccctaaccctagtcttgttcatgttcctggacccacactcccttcttaccaaacagtaccttcagcacacatgtcagct |
108 |
Q |
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| T |
5787754 |
acatcatcatcatcaagaaaaccctaaccctagtcttgttcatgtttctggacccacactcccttcttaccaaacagtaccttcggcacacatgtcagct |
5787655 |
T |
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| Q |
109 |
actgcattgttgcagaaagcagctcaaatgggtgcaacaatgaatagaagtggttctgcttcttcacctgctatgaatatcaaaacccaccaagttgatt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5787654 |
actgcattgttgcagaaagcagctcaaatgggtgcaacaatgaatagaagtggttctgcttcttcacctgctatgaatatcaagacccaccaagttgatt |
5787555 |
T |
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| Q |
209 |
ctctcaataatgtctctggtaattttggtttgaatttgttgtcat |
253 |
Q |
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| T |
5787554 |
ctctcaataatgtctctggtaattttggtttgaatttgttgtcat |
5787510 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 42899263 - 42899312
Alignment:
| Q |
97 |
cacatgtcagctactgcattgttgcagaaagcagctcaaatgggtgcaac |
146 |
Q |
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| T |
42899263 |
cacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaac |
42899312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 36990851 - 36990900
Alignment:
| Q |
97 |
cacatgtcagctactgcattgttgcagaaagcagctcaaatgggtgcaac |
146 |
Q |
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| T |
36990851 |
cacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaac |
36990900 |
T |
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