View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15349_low_14 (Length: 263)

Name: NF15349_low_14
Description: NF15349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15349_low_14
NF15349_low_14
[»] chr7 (4 HSPs)
chr7 (35-239)||(21620603-21620807)
chr7 (116-204)||(22731250-22731338)
chr7 (100-181)||(17880025-17880106)
chr7 (73-147)||(10677037-10677112)
[»] chr8 (5 HSPs)
chr8 (38-199)||(20049529-20049691)
chr8 (121-206)||(13281250-13281335)
chr8 (121-192)||(30214034-30214105)
chr8 (38-113)||(27137877-27137953)
chr8 (88-168)||(29290886-29290967)
[»] chr5 (1 HSPs)
chr5 (42-192)||(17245990-17246141)
[»] chr2 (5 HSPs)
chr2 (38-170)||(19693339-19693472)
chr2 (100-204)||(12060631-12060735)
chr2 (100-204)||(42297836-42297940)
chr2 (107-204)||(24228036-24228133)
chr2 (83-170)||(9124098-9124186)
[»] chr1 (1 HSPs)
chr1 (83-202)||(25517249-25517370)
[»] chr3 (4 HSPs)
chr3 (61-188)||(9829434-9829562)
chr3 (107-192)||(10686344-10686429)
chr3 (107-169)||(24097711-24097774)
chr3 (110-163)||(19264403-19264456)
[»] chr4 (5 HSPs)
chr4 (52-201)||(11442121-11442271)
chr4 (52-201)||(11551424-11551574)
chr4 (100-166)||(17133605-17133671)
chr4 (40-192)||(11434606-11434759)
chr4 (100-204)||(8502125-8502229)
[»] scaffold0194 (1 HSPs)
scaffold0194 (83-163)||(6989-7070)
[»] scaffold0042 (1 HSPs)
scaffold0042 (108-204)||(89380-89476)
[»] scaffold0425 (1 HSPs)
scaffold0425 (84-135)||(2566-2618)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 21620807 - 21620603
Alignment:
Q  35 cataggtgtaagaaagttaaagtgcaaatgactttagaatacttcaacaattctaagattgaaagttgtaataatttctctaagtatttgtgtgttatat 134  Q
    |||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21620807 cataggtgtaagaaagttaaagtgcaaatgactttagaatccttaaaaaattctaagattgaaagttgtaagaatttctctaagtatttgtgtgttatat 21620708  T
Q  135 aatttgacagagtaagggcaattgtaaaatgatagaggtcttgttatttttcttcaaccgctcaggtcctcatctcaatctgataattcttgtgctcagt 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21620707 aatttgacagagtaagggcaattgtaaaatgatagaggtcttgttacttttcttcaaccgctcaggtcctcatctcaatctgataattcttgcgctcagt 21620608  T
Q  235 ctcac 239  Q
    |||||    
T  21620607 ctcac 21620603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 22731250 - 22731338
Alignment:
Q  116 aagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaatgatagaggtcttgttatttttcttcaaccgctcaggtcct 204  Q
    |||| ||||| | |||||||||||||||||||| ||||| |||| |||||||||| |||||||||| |||||||||  |||||||||||    
T  22731250 aagtgtttgtatattatataatttgacagagtacgggcacttgtgaaatgatagaagtcttgttatgtttcttcaagtgctcaggtcct 22731338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 17880025 - 17880106
Alignment:
Q  100 ttgtaataatttctctaagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaatgatagaggtcttgttat 181  Q
    |||||| ||||| | ||||| |||||||| |||||||||||||||||||||| || || |||||||||||| ||||||||||    
T  17880025 ttgtaagaatttatgtaagtgtttgtgtgctatataatttgacagagtaaggacacttttaaaatgatagaagtcttgttat 17880106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 10677037 - 10677112
Alignment:
Q  73 atacttcaacaattctaagat-tgaaagttgtaataatttctctaagtatttgtgtgttatataatttgacagagt 147  Q
    ||||||||| ||||||||||| ||||  |||||| ||||| || |||| |||||||| ||||||||||||||||||    
T  10677037 atacttcaaaaattctaagatatgaagtttgtaagaatttttcaaagtgtttgtgtgctatataatttgacagagt 10677112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 38 - 199
Target Start/End: Complemental strand, 20049691 - 20049529
Alignment:
Q  38 aggtgtaagaaagttaaagtgcaaatgactttagaatacttcaacaattctaagattgaaag-ttgtaataatttctctaagtatttgtgtgttatataa 136  Q
    ||||||||||||| |||||||||| |||||| | ||||||| |  ||||||| ||||||||| |||||| ||||||||||||| |||||| | |||||||    
T  20049691 aggtgtaagaaagctaaagtgcaagtgacttcataatacttaagaaattctatgattgaaagcttgtaagaatttctctaagtgtttgtgcgctatataa 20049592  T
Q  137 tttgacagagtaagggcaattgtaaaatgatagaggtcttgttatttttcttcaaccgctcag 199  Q
     |||| || ||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||||    
T  20049591 cttgatagggtaagggcacttgtaaaatgatagaagtcttgttaattttcttcaaccggtcag 20049529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 13281250 - 13281335
Alignment:
Q  121 tttgtgtgttatataatttgacagagtaagggcaattgtaaaatgatagaggtcttgttatttttcttcaaccgctcaggtcctca 206  Q
    |||||| | |||||||||||||| |||||||| | ||||||||||||||| ||||| |||||||| |||||| |||||||||||||    
T  13281250 tttgtgcgctatataatttgacaaagtaagggaacttgtaaaatgatagaagtctttttatttttattcaactgctcaggtcctca 13281335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 30214034 - 30214105
Alignment:
Q  121 tttgtgtgttatataatttgacagagtaagggcaattgtaaaatgatagaggtcttgttatttttcttcaac 192  Q
    |||||| | ||||||||| ||||||||||| ||| ||||||||||||||| ||||| || ||||||||||||    
T  30214034 tttgtgcgctatataattcgacagagtaagagcacttgtaaaatgatagaagtcttcttctttttcttcaac 30214105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 27137877 - 27137953
Alignment:
Q  38 aggtgtaagaaagttaaagtgcaaatgactttagaatacttcaacaattctaagattgaaag-ttgtaataatttct 113  Q
    ||||||||||||||||||||| |||||||||   ||||||| |  ||||||||||||||||| |||||| |||||||    
T  27137877 aggtgtaagaaagttaaagtgaaaatgacttctaaatacttaagaaattctaagattgaaagcttgtaagaatttct 27137953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 29290967 - 29290886
Alignment:
Q  88 taagattgaaagtt-gtaataatttctctaagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaatgata 168  Q
    |||||||||||||| |||| ||||||  ||||| |||||| | ||| |||||||||||||||| |  | |||||||||||||    
T  29290967 taagattgaaagtttgtaagaatttcagtaagtgtttgtgcgctatgtaatttgacagagtaaagaaacttgtaaaatgata 29290886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 17245990 - 17246141
Alignment:
Q  42 gtaagaaagttaaagtgcaaatgactttagaatacttcaacaattctaagattgaaagttg-taataatttctctaagtatttgtgtgttatataatttg 140  Q
    ||||||| |||||||||||| ||||||  ||| |||| |  ||||||| |||||||||||  ||| ||||| ||||||| |||||| | |||||| ||||    
T  17245990 gtaagaatgttaaagtgcaagtgacttatgaacacttaagaaattctatgattgaaagtttataagaatttttctaagtgtttgtgcgatatatattttg 17246089  T
Q  141 acagagtaagggcaattgtaaaatgatagaggtcttgttatttttcttcaac 192  Q
    ||| ||||||| || ||||||||||| ||| |||||||||||||||||||||    
T  17246090 acatagtaaggacacttgtaaaatgacagaagtcttgttatttttcttcaac 17246141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 19693472 - 19693339
Alignment:
Q  38 aggtgtaagaaagttaaagtgcaaatgactttagaatacttcaacaattctaagattgaaagtt-gtaataatttctctaagtatttgtgtgttatataa 136  Q
    |||||||| ||| ||||||||||| |||||| | | || || |  ||||||||||||||||||| |||  ||||||||||||||||||||   |||||||    
T  19693472 aggtgtaaaaaacttaaagtgcaagtgacttcatattaattaagaaattctaagattgaaagtttgtacaaatttctctaagtatttgtgctctatataa 19693373  T
Q  137 tttgacagagtaagggcaattgtaaaatgataga 170  Q
    ||||| |||||||||||| |||||||||||||||    
T  19693372 tttgatagagtaagggcacttgtaaaatgataga 19693339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 12060631 - 12060735
Alignment:
Q  100 ttgtaataatttctctaagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaatgatagaggtcttgttatttttcttcaaccgctcag 199  Q
    |||||| ||||||||||| | ||||||   |||||||||||||| ||||||| ||  |||||||||| ||| ||||| ||||||||||| |||  |||||    
T  12060631 ttgtaagaatttctctaaatgtttgtgcactatataatttgacaaagtaaggacacgtgtaaaatgacagaagtcttattatttttcttaaactactcag 12060730  T
Q  200 gtcct 204  Q
    |||||    
T  12060731 gtcct 12060735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 42297940 - 42297836
Alignment:
Q  100 ttgtaataatttctctaagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaatgatagaggtcttgttatttttcttcaaccgctcag 199  Q
    |||||| ||||||| |||||  || || | |||||| ||||||| |||||||||| | ||||||| | ||| |||||||| |||||||||||| ||||||    
T  42297940 ttgtaagaatttctttaagtgattatgcgctatatattttgacaaagtaagggcactagtaaaattacagaagtcttgttgtttttcttcaactgctcag 42297841  T
Q  200 gtcct 204  Q
    |||||    
T  42297840 gtcct 42297836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 24228133 - 24228036
Alignment:
Q  107 aatttctctaagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaatgatagaggtcttgttatttttcttcaaccgctcaggtcct 204  Q
    ||||||||||||  |||||| | |||||||  |||||||||||  | | || |||||||||||| ||||| |||||||||| |||| |||||||||||    
T  24228133 aatttctctaagcttttgtgcgctatataagatgacagagtaaaagaacttttaaaatgatagaagtcttattatttttctccaactgctcaggtcct 24228036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 9124098 - 9124186
Alignment:
Q  83 aattctaagat-tgaaagttgtaataatttctctaagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaatgataga 170  Q
    ||||||||||| | ||| |||| | ||||| ||||||| |||||||| ||| |||||||||||||||| | || ||||||| |||||||    
T  9124098 aattctaagatataaaatttgtgagaatttttctaagtgtttgtgtgctatgtaatttgacagagtaatgacacttgtaaactgataga 9124186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 25517249 - 25517370
Alignment:
Q  83 aattctaagat-tgaaagtt-gtaataatttctctaagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaatgatagaggtcttgtta 180  Q
    ||||||||||| |||||||| |||| ||||||||||||  |||||| ||||||| ||| |||||||||| | || ||||||||||||||| |||||||||    
T  25517249 aattctaagatatgaaagtttgtaagaatttctctaagagtttgtgcgttatattattcgacagagtaaagacacttgtaaaatgatagaagtcttgtta 25517348  T
Q  181 tttttcttcaaccgctcaggtc 202  Q
    | |||||||||| |||||||||    
T  25517349 tatttcttcaactgctcaggtc 25517370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 9829562 - 9829434
Alignment:
Q  61 aatgactttagaatacttcaacaattctaagat-tgaaagttgtaataatttctctaagtatttgtgtgttatataatttgacagagtaagggcaattgt 159  Q
    ||||||||  |||||||| |  ||||||||||| ||||| |||||| ||||||||||||| |||||||||| | |||||||||||||||||| ||  |||    
T  9829562 aatgacttctgaatacttaagaaattctaagatatgaaatttgtaagaatttctctaagtgtttgtgtgttgtgtaatttgacagagtaaggacacctgt 9829463  T
Q  160 aaaatgatagaggtcttgttatttttctt 188  Q
     ||||||| || ||| |||| ||||||||    
T  9829462 taaatgatggaagtcctgttgtttttctt 9829434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 10686344 - 10686429
Alignment:
Q  107 aatttctctaagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaatgatagaggtcttgttatttttcttcaac 192  Q
    ||||||||||| | |||||| | | ||||||||||||| |||||| || ||||||||  |||||  ||||||||||||| ||||||    
T  10686344 aatttctctaaatgtttgtgcgctgtataatttgacagggtaaggacacttgtaaaaaaatagaaatcttgttatttttgttcaac 10686429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 24097774 - 24097711
Alignment:
Q  107 aatttctct-aagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaatgatag 169  Q
    ||||||||| |||| |||||| | |||||||||||| | |||||||||| ||||||||||||||    
T  24097774 aatttctcttaagtgtttgtgcgctatataatttgataaagtaagggcacttgtaaaatgatag 24097711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 19264403 - 19264456
Alignment:
Q  110 ttctctaagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaa 163  Q
    ||||||||||  |||||||||||  | |||||||||||||||||| ||||||||    
T  19264403 ttctctaagtgattgtgtgttatcgattttgacagagtaagggcacttgtaaaa 19264456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 201
Target Start/End: Original strand, 11442121 - 11442271
Alignment:
Q  52 taaagtgcaaatgactttagaatacttcaacaattctaagattgaaagtt-gtaataatttctctaagtatttgtgtgttatataatttgacagagtaag 150  Q
    |||||||||| ||||||  ||| |||| || ||||||||| || |||||| |||| ||||| |||||||||||||| | ||| |||||| | |||||||     
T  11442121 taaagtgcaagtgacttctgaacacttaaaaaattctaaggttcaaagtttgtaagaatttttctaagtatttgtgcgctatttaatttaatagagtaat 11442220  T
Q  151 ggcaattgtaaaatgatagaggtcttgttatttttcttcaaccgctcaggt 201  Q
    |  | |||||||| |||||| |||||||| | |||||||||| ||||||||    
T  11442221 gatacttgtaaaaagatagaagtcttgttgtatttcttcaactgctcaggt 11442271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 201
Target Start/End: Complemental strand, 11551574 - 11551424
Alignment:
Q  52 taaagtgcaaatgactttagaatacttcaacaattctaagattgaaagtt-gtaataatttctctaagtatttgtgtgttatataatttgacagagtaag 150  Q
    |||||||||| ||||||  ||| |||| || ||||||||| || |||||| |||| ||||| |||||||||||||| | ||| |||||| | |||||||     
T  11551574 taaagtgcaagtgacttctgaacacttaaaaaattctaaggttcaaagtttgtaagaatttttctaagtatttgtgcgctatttaatttaatagagtaat 11551475  T
Q  151 ggcaattgtaaaatgatagaggtcttgttatttttcttcaaccgctcaggt 201  Q
    |  | |||||||| |||||| |||||||| | |||||||||| ||||||||    
T  11551474 gatacttgtaaaaagatagaagtcttgttgtatttcttcaactgctcaggt 11551424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 17133605 - 17133671
Alignment:
Q  100 ttgtaataatttctctaagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaatga 166  Q
    |||||| |||||||| |||| |||||| | ||||||||||||||||||||| | | |||||||||||    
T  17133605 ttgtaagaatttctccaagtgtttgtgagctatataatttgacagagtaagagtacttgtaaaatga 17133671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 192
Target Start/End: Original strand, 11434606 - 11434759
Alignment:
Q  40 gtgtaagaaagttaaagtgcaaatgactttagaatacttcaacaattctaagattgaaagtt-gtaataatttctctaagtatttgtgtgttatataatt 138  Q
    |||||||||| |||||| |||| ||||||| ||| ||||  | |||| || | | ||||||| |||| ||||| |||||||||||| | |||||  | ||    
T  11434606 gtgtaagaaacttaaagggcaagtgacttttgaacacttagaaaattttatggtcgaaagtttgtaagaatttttctaagtatttgggcgttattgattt 11434705  T
Q  139 tgacagagtaagggcaattgtaaaatgatagaggtcttgttatttttcttcaac 192  Q
    |||||||| || |  |||||||||| ||||||  ||||||| | ||||||||||    
T  11434706 tgacagaggaatgataattgtaaaaagatagaattcttgttgtatttcttcaac 11434759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 8502125 - 8502229
Alignment:
Q  100 ttgtaataatttctctaagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaatgatagaggtcttgttatttttcttcaaccgctcag 199  Q
    |||||| ||||||||||| | ||| || | ||| ||||||||||  | |||| || || |||||||||||| ||||| |||| |||||||||| | ||||    
T  8502125 ttgtaagaatttctctaattgtttatgcgctatttaatttgacaatggaaggacacttataaaatgatagaagtcttattatatttcttcaactgttcag 8502224  T
Q  200 gtcct 204  Q
    |||||    
T  8502225 gtcct 8502229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 7070 - 6989
Alignment:
Q  83 aattctaagattgaaagttgt-aataatttctctaagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaa 163  Q
    |||||||||||  |||||| | |||||||||||||||| |||||||| |||||||||||| ||||||||| || ||||||||    
T  7070 aattctaagatataaagtttttaataatttctctaagtgtttgtgtgctatataatttgatagagtaaggacacttgtaaaa 6989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 89476 - 89380
Alignment:
Q  108 atttctctaagtatttgtgtgttatataatttgacagagtaagggcaattgtaaaatgatagaggtcttgttatttttcttcaaccgctcaggtcct 204  Q
    ||||||| |||| |||||| | ||| |||||||||| |||||||||| |||||||||||  || |||||||  |||||||||||| ||||| |||||    
T  89476 atttctcaaagtgtttgtgcgctatttaatttgacaaagtaagggcacttgtaaaatgacggaagtcttgtggtttttcttcaactgctcatgtcct 89380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 2566 - 2618
Alignment:
Q  84 attctaagattgaaagtt-gtaataatttctctaagtatttgtgtgttatata 135  Q
    |||||||||||||||||| |||| ||||||||||||| |||||| | ||||||    
T  2566 attctaagattgaaagtttgtaagaatttctctaagtgtttgtgcgctatata 2618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University