View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15349_low_17 (Length: 236)
Name: NF15349_low_17
Description: NF15349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15349_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 37180426 - 37180637
Alignment:
| Q |
16 |
atttgaaggagggtagttcggaagaaccatcaagagcttttgcaaannnnnnn-agttcaacttcttgggtttcactttgacaaaagggagccaattaat |
114 |
Q |
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| T |
37180426 |
atttgaaggagggtagttcggaagaaccatcaagagcttttgcaatttttagttagttcaacttattgggtttcactttgacaaaagggagccaattaat |
37180525 |
T |
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| Q |
115 |
tataaatataaatacactaaaatacca-nnnnnnnaaattacatattcgatagtccttacatcctataatcttactaataacaaaggttaataggttaat |
213 |
Q |
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| T |
37180526 |
tataaatataaatacactaaaataccattttttttaaattacatattcgatagtccctacatcctataatcatactaataacaaaggttaatatgttaat |
37180625 |
T |
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| Q |
214 |
tgttttcttctt |
225 |
Q |
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|||||||||||| |
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| T |
37180626 |
tgttttcttctt |
37180637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 37189428 - 37189384
Alignment:
| Q |
16 |
atttgaaggagggtagttcggaagaaccatcaagagcttttgcaa |
60 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37189428 |
atttgaaggagggtagttcggatgaaccatcaagagcttttgcaa |
37189384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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