View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15349_low_20 (Length: 226)
Name: NF15349_low_20
Description: NF15349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15349_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 50236899 - 50236705
Alignment:
| Q |
14 |
gcagagacaataaagaactttgctgtgatataccttgtggacatcacagaggtgcctgactttaacactatgtatgagctgtatgacccttccacagtta |
113 |
Q |
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| T |
50236899 |
gcagagacaataaagaactttgctgtgatataccttgtggacatcacagaggtgcctgactttaacactatgtatgagctgtatgacccttccacagtta |
50236800 |
T |
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| Q |
114 |
tgttcttctttaggaacaagcacatcatgatagaccttggaactggaaacaacaacaagatcaattgggctatgaaggacaaacaggagttcatt |
208 |
Q |
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| T |
50236799 |
tgttcttctttaggaacaagcacatcatgatagaccttggaactggaaacaacaacaagatcaattgggctatgaaggacaaacaggagttcatt |
50236705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 17278895 - 17278701
Alignment:
| Q |
14 |
gcagagacaataaagaactttgctgtgatataccttgtggacatcacagaggtgcctgactttaacactatgtatgagctgtatgacccttccacagtta |
113 |
Q |
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| T |
17278895 |
gcagagacaataaagaactttgctgtgatataccttgtggacatcacagaggtgcctgatttcaacactatgtatgagctgtacgacccttcgacagtca |
17278796 |
T |
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| Q |
114 |
tgttcttctttaggaacaagcacatcatgatagaccttggaactggaaacaacaacaagatcaattgggctatgaaggacaaacaggagttcatt |
208 |
Q |
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| T |
17278795 |
tgttcttctttaggaacaagcacatcatgatagatcttggaactggaaacaacaacaaaatcaattgggctatgaaggacaaacaggagttcatt |
17278701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 28719439 - 28719615
Alignment:
| Q |
32 |
tttgctgtgatataccttgtggacatcacagaggtgcctgactttaacactatgtatgagctgtatgacccttccacagttatgttcttctttaggaaca |
131 |
Q |
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| T |
28719439 |
tttgcggttatatacttggtggacattacagaggtgcctgattttaacaccatgtatgagttgtatgatccctgcacggttatgtttttctttaggaaca |
28719538 |
T |
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| Q |
132 |
agcacatcatgatagaccttggaactggaaacaacaacaagatcaattgggctatgaaggacaaacaggagttcatt |
208 |
Q |
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| T |
28719539 |
aacacattatgattgaccttggaacaggtaacaacaataagattaattgggctctcagagacaaacaagagttcatt |
28719615 |
T |
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