View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15349_low_4 (Length: 391)

Name: NF15349_low_4
Description: NF15349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15349_low_4
NF15349_low_4
[»] chr7 (4 HSPs)
chr7 (139-364)||(27338111-27338336)
chr7 (15-59)||(27338521-27338565)
chr7 (139-218)||(18926322-18926401)
chr7 (139-215)||(34681690-34681766)
[»] chr4 (5 HSPs)
chr4 (139-220)||(2063468-2063549)
chr4 (139-240)||(24546740-24546840)
chr4 (140-202)||(48097963-48098025)
chr4 (148-217)||(2818355-2818424)
chr4 (153-221)||(35605273-35605340)
[»] chr3 (12 HSPs)
chr3 (139-218)||(54290809-54290888)
chr3 (139-217)||(43803965-43804043)
chr3 (142-217)||(11692729-11692804)
chr3 (139-200)||(31625372-31625433)
chr3 (139-220)||(53040462-53040543)
chr3 (139-200)||(3973826-3973887)
chr3 (139-200)||(4009518-4009579)
chr3 (162-199)||(7674307-7674344)
chr3 (153-218)||(37708432-37708497)
chr3 (177-218)||(45757924-45757965)
chr3 (177-218)||(48551035-48551076)
chr3 (209-241)||(42939521-42939553)
[»] chr8 (7 HSPs)
chr8 (139-218)||(31264992-31265071)
chr8 (139-220)||(37564364-37564445)
chr8 (142-220)||(25279922-25279999)
chr8 (153-240)||(11533205-11533292)
chr8 (139-241)||(39691146-39691248)
chr8 (143-219)||(1502706-1502783)
chr8 (154-217)||(42022640-42022703)
[»] chr2 (11 HSPs)
chr2 (139-218)||(32859780-32859859)
chr2 (139-240)||(18684333-18684436)
chr2 (139-215)||(40347979-40348055)
chr2 (140-218)||(44195502-44195580)
chr2 (139-223)||(14663212-14663296)
chr2 (139-217)||(38292364-38292443)
chr2 (153-215)||(41543975-41544038)
chr2 (139-213)||(9049182-9049256)
chr2 (139-201)||(9153506-9153568)
chr2 (142-218)||(13538391-13538467)
chr2 (196-240)||(33634887-33634931)
[»] chr5 (7 HSPs)
chr5 (139-220)||(25437906-25437988)
chr5 (142-217)||(24041058-24041133)
chr5 (154-218)||(27310260-27310325)
chr5 (139-215)||(14309119-14309195)
chr5 (140-190)||(7210952-7211002)
chr5 (140-218)||(16161414-16161492)
chr5 (170-240)||(34032153-34032223)
[»] chr1 (8 HSPs)
chr1 (139-217)||(46592501-46592579)
chr1 (139-218)||(5250933-5251012)
chr1 (142-215)||(5423781-5423854)
chr1 (159-220)||(39912262-39912323)
chr1 (142-217)||(10370419-10370494)
chr1 (140-220)||(44442243-44442323)
chr1 (142-211)||(1600951-1601020)
chr1 (153-190)||(4521054-4521091)
[»] scaffold0011 (1 HSPs)
scaffold0011 (142-220)||(219183-219261)
[»] chr6 (1 HSPs)
chr6 (140-220)||(25028731-25028811)
[»] scaffold0009 (1 HSPs)
scaffold0009 (170-219)||(189063-189112)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 139 - 364
Target Start/End: Complemental strand, 27338336 - 27338111
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtctcaagaacactcgttcac 238  Q
    |||||||||||||| |||||||||||||| |||| | ||||||||||||||| ||  ||||||| ||||||||||||||| | |||||||||||||||||    
T  27338336 ttgtgtatttaatatattggaaattgaactgtttgatttttttaaagaataattttctaatttagcatgcttaaagagtgccccaagaacactcgttcac 27338237  T
Q  239 aaagcctttatttataaactatctaggggacaaactcaattagaaactcaactacataactaaaatattctggattttaattcagataaacatgttaaag 338  Q
    ||  ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  27338236 aagacctttgtttataaactatctaggtgacaaactcaattagaaactcaactccataactaaaatattctggattttaactcagataaacatgttaaag 27338137  T
Q  339 ataagagaaatgctaaccagtgtttc 364  Q
    ||||||||||||||||| ||||||||    
T  27338136 ataagagaaatgctaacgagtgtttc 27338111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 27338565 - 27338521
Alignment:
Q  15 aacctaattgcccttgcacgtgccaagtgtgtgtacaacgatttc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27338565 aacctaattgcccttgcacgtgccaagtgtgtgtacaacgatttc 27338521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 18926401 - 18926322
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtg 218  Q
    ||||||||| ||| ||||| |||||||||  ||| || |||||||||||||| ||||| |||||| ||||||||||||||    
T  18926401 ttgtgtattcaatgcattgaaaattgaactatttcacctttttaaagaataatttcatgatttaaaatgcttaaagagtg 18926322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 34681766 - 34681690
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaaga 215  Q
    ||||||||||||| |||||||||||||||  ||| |||||| |||| ||||| ||| |||||||  |||||||||||    
T  34681766 ttgtgtatttaatgcattggaaattgaactatttgacttttgtaaaaaataatttcctaatttagaatgcttaaaga 34681690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 2063549 - 2063468
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtc 220  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  2063549 ttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatttagcatgcttaaagagtgtc 2063468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 24546740 - 24546840
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtctcaagaacactcgttcac 238  Q
    ||||||||||||||||||||||||||||| | || | ||||||||||||||| ||| |||||||||||||||||||||||| || ||| |||||||| ||    
T  24546740 ttgtgtatttaatacattggaaattgaactgcttgaattttttaaagaataatttcctaatttaacatgcttaaagagtgt-tctagagcactcgttaac 24546838  T
Q  239 aa 240  Q
    ||    
T  24546839 aa 24546840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 48098025 - 48097963
Alignment:
Q  140 tgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataattta 202  Q
    ||||||||||||  ||||||||||||||  ||||||||||||||||||||| ||| |||||||    
T  48098025 tgtgtatttaatgtattggaaattgaactatttaacttttttaaagaataatttcttaattta 48097963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 2818424 - 2818355
Alignment:
Q  148 taatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagt 217  Q
    |||| |||||||||||||||  ||| || |||| ||||||||| ||| |||||||| |||||||||||||    
T  2818424 taatgcattggaaattgaactttttgaccttttaaaagaataatttcttaatttaaaatgcttaaagagt 2818355  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 35605340 - 35605273
Alignment:
Q  153 cattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtct 221  Q
    ||||||||||||||| |||| ||||||||||| ||||| ||| |||| | | ||| |||||||||||||    
T  35605340 cattggaaattgaactgtttgacttttttaaa-aataatttcttaatgttaaatgtttaaagagtgtct 35605273  T

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Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 54290809 - 54290888
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtg 218  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  54290809 ttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatttatcatgcttaaagagtg 54290888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 43804043 - 43803965
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagt 217  Q
    ||||||||||||||||||||||||||||  |||| ||||||||||||||||||||   |||||| ||||||||||||||    
T  43804043 ttgtgtatttaatacattggaaattgaattgtttgacttttttaaagaataactttccaatttatcatgcttaaagagt 43803965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 11692804 - 11692729
Alignment:
Q  142 tgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagt 217  Q
    |||||||||||||||| ||||| |||  ||| ||||||||||||||||| ||  |||||||| |||||||||||||    
T  11692804 tgtatttaatacattgcaaattaaactatttcacttttttaaagaataattttttaatttaatatgcttaaagagt 11692729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 31625372 - 31625433
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatt 200  Q
    |||||||||||||||||| || || |||| |||| ||||||||||||||||||||| |||||    
T  31625372 ttgtgtatttaatacatttgacatagaacagtttgacttttttaaagaataacttcctaatt 31625433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 53040543 - 53040462
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtc 220  Q
    ||||||||| ||||||||||||||||||   ||| | ||||||||| ||||| ||| |||||||  || |||||||||||||    
T  53040543 ttgtgtattcaatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttaaagagtgtc 53040462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 3973887 - 3973826
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatt 200  Q
    ||||| ||||||| ||| |||||||||| |||| ||||||||||| |||||| ||| |||||    
T  3973887 ttgtgcatttaatgcatcggaaattgaagcgttgaacttttttaaggaataatttcttaatt 3973826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 4009518 - 4009579
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatt 200  Q
    ||||| ||||||| ||| |||||||||| |||| ||||||||||| |||||| ||| |||||    
T  4009518 ttgtgcatttaatgcatcggaaattgaagcgttgaacttttttaaggaataatttcttaatt 4009579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 7674344 - 7674307
Alignment:
Q  162 ttgaaccgtttaacttttttaaagaataacttcataat 199  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  7674344 ttgaactgtttaacttttttaaagaataatttcataat 7674307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 37708497 - 37708432
Alignment:
Q  153 cattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtg 218  Q
    ||||| ||||||||  |||||||||||||||||| ||| | | || ||||| ||||||||||||||    
T  37708497 cattgaaaattgaaatgtttaacttttttaaagactaattgcttattttaatatgcttaaagagtg 37708432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 45757965 - 45757924
Alignment:
Q  177 tttttaaagaataacttcataatttaacatgcttaaagagtg 218  Q
    |||||||||||||| | | |||||||||||||||||||||||    
T  45757965 tttttaaagaataattgcttaatttaacatgcttaaagagtg 45757924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 48551076 - 48551035
Alignment:
Q  177 tttttaaagaataacttcataatttaacatgcttaaagagtg 218  Q
    |||||||||||||| ||| ||||||| |||||||||||||||    
T  48551076 tttttaaagaataatttcttaatttagcatgcttaaagagtg 48551035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 42939553 - 42939521
Alignment:
Q  209 ttaaagagtgtctcaagaacactcgttcacaaa 241  Q
    ||||||||||||||||||||||||||| |||||    
T  42939553 ttaaagagtgtctcaagaacactcgttaacaaa 42939521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 31265071 - 31264992
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtg 218  Q
    ||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  31265071 ttgtgtatttaatacattggaaattgaattgtttgacttttttaaagaataacttcctaatttagcatgcttaaagagtg 31264992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 37564364 - 37564445
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtc 220  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||||| ||| ||||||| |||| ||||||||||||    
T  37564364 ttgtgtatttaatacattggaaattgaactatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtgtc 37564445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 25279999 - 25279922
Alignment:
Q  142 tgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtc 220  Q
    |||||||||||||||||||||||||   ||| ||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  25279999 tgtatttaatacattggaaattgaattatttgacttttt-aaagaataacttcctaatttagcatgcttaaagagtgtc 25279922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 11533292 - 11533205
Alignment:
Q  153 cattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtctcaagaacactcgttcacaa 240  Q
    ||||||||||||||   ||| || |||||||||||||| ||  |||||||||||| |||||||||||| | | |||||||||| ||||    
T  11533292 cattggaaattgaaaactttgacatttttaaagaataatttattaatttaacatgtttaaagagtgtcccgaaaacactcgttaacaa 11533205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 39691146 - 39691248
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtctcaagaacactcgttcac 238  Q
    ||||||||| ||| ||||| |||||||||  ||| ||||||||||||||||| ||  |||| |   |||||||||||||||||| ||  |||||||| ||    
T  39691146 ttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaatgtggaatgcttaaagagtgtctcgagggcactcgttaac 39691245  T
Q  239 aaa 241  Q
    |||    
T  39691246 aaa 39691248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 1502706 - 1502783
Alignment:
Q  143 gtatttaatacattggaaattgaaccgttt-aacttttttaaagaataacttcataatttaacatgcttaaagagtgt 219  Q
    ||||||||| ||||| ||||||||| |||| || ||||||||||||||| ||| |||||||  ||| |||||||||||    
T  1502706 gtatttaatgcattgaaaattgaactgtttgaatttttttaaagaataatttcctaatttagaatgtttaaagagtgt 1502783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 42022640 - 42022703
Alignment:
Q  154 attggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagt 217  Q
    ||||||||||||||  ||| ||||||||||| ||||| ||  |||||||| |||||||||||||    
T  42022640 attggaaattgaactatttgacttttttaaaaaataattttttaatttaaaatgcttaaagagt 42022703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 32859859 - 32859780
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtg 218  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||| ||||||||||    
T  32859859 ttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatttagcatgtttaaagagtg 32859780  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 18684436 - 18684333
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgctt--aaagagtgtctcaagaacactcgttc 236  Q
    ||||||||||||||||||||||||||||  || | ||||||||||||||||||||| ||||||| |||||||  |||||||||| | ||| ||||||||     
T  18684436 ttgtgtatttaatacattggaaattgaattgtatgacttttttaaagaataacttcctaatttagcatgctttaaaagagtgtcccgagagcactcgtta 18684337  T
Q  237 acaa 240  Q
    ||||    
T  18684336 acaa 18684333  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 40347979 - 40348055
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaaga 215  Q
    ||||||||||||||||||  ||||||||| |||| ||||||||||||||||||||| | || || ||||||||||||    
T  40347979 ttgtgtatttaatacattaaaaattgaactgtttgacttttttaaagaataacttcctgatctagcatgcttaaaga 40348055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 44195580 - 44195502
Alignment:
Q  140 tgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtg 218  Q
    |||||||||||| ||||| ||||||||   |||||||||| |||||||||| ||| |||||||| ||||||||||||||    
T  44195580 tgtgtatttaatgcattgtaaattgaattatttaacttttgtaaagaataatttcttaatttaaaatgcttaaagagtg 44195502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 14663212 - 14663296
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtctca 223  Q
    ||||| |||||||  ||||||||||||||  ||| |||| |||||||||||| ||  |||||||| ||||||||| |||||||||    
T  14663212 ttgtgcatttaatgtattggaaattgaactatttgacttatttaaagaataattttttaatttaaaatgcttaaaaagtgtctca 14663296  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 38292443 - 38292364
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaa-gaataacttcataatttaacatgcttaaagagt 217  Q
    ||||||||||||| |||||  ||||||||  ||| |||||| |||| |||||| ||| |||||||| |||||||||||||    
T  38292443 ttgtgtatttaatgcattgataattgaactatttcacttttctaaaagaataatttcctaatttaaaatgcttaaagagt 38292364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 41544038 - 41543975
Alignment:
Q  153 cattggaaattgaaccgttt-aacttttttaaagaataacttcataatttaacatgcttaaaga 215  Q
    |||||||||||||||  ||| || ||||||||||||||| ||| |||||||| |||||||||||    
T  41544038 cattggaaattgaactatttgaatttttttaaagaataatttcctaatttaatatgcttaaaga 41543975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 9049182 - 9049256
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaa 213  Q
    ||||||| ||||| ||||| ||||||||   |||||| |||| ||||||||| | | ||||||||||||||||||    
T  9049182 ttgtgtaattaatgcattgaaaattgaaaaatttaacattttaaaagaataattacttaatttaacatgcttaaa 9049256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 9153506 - 9153568
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataattt 201  Q
    ||||||||| ||| ||||||||||||||  ||||  |||||||||||||||| ||| ||||||    
T  9153506 ttgtgtattcaatgcattggaaattgaagtgtttgccttttttaaagaataatttcttaattt 9153568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 13538467 - 13538391
Alignment:
Q  142 tgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtg 218  Q
    |||||| ||| ||||||||||||||   ||| | ||||||||||||||| ||  |||||||  ||||||||||||||    
T  13538467 tgtattcaatgcattggaaattgaattatttgaattttttaaagaataattttctaatttagtatgcttaaagagtg 13538391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 33634887 - 33634931
Alignment:
Q  196 taatttaacatgcttaaagagtgtctcaagaacactcgttcacaa 240  Q
    ||||||||||| ||||||||||||||||||  |||||||| ||||    
T  33634887 taatttaacatccttaaagagtgtctcaagtgcactcgttaacaa 33634931  T

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Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 25437906 - 25437988
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaactttt-ttaaagaataacttcataatttaacatgcttaaagagtgtc 220  Q
    ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  25437906 ttgtgtatttaatacattggaaattgaactgtttcactttttttaaagaataacttcttaatttagcatgcttaaagagtgtc 25437988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 24041058 - 24041133
Alignment:
Q  142 tgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagt 217  Q
    ||||||||||  |||||||||| |||  ||| | ||||||||||||||| |||||||||| | |||||||||||||    
T  24041058 tgtatttaatgtattggaaattaaactatttgaattttttaaagaataatttcataatttgatatgcttaaagagt 24041133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 27310260 - 27310325
Alignment:
Q  154 attggaaattgaaccgtttaacttttttaaagaataacttcataattta-acatgcttaaagagtg 218  Q
    |||||||||||||  |||  ||||||||||||||||| ||||||||||| | ||||||||||||||    
T  27310260 attggaaattgaattgttagacttttttaaagaataatttcataatttataaatgcttaaagagtg 27310325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 14309119 - 14309195
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaaga 215  Q
    ||||||| ||||| ||||||||||||||   ||| |  |||||||||||||||| | |||||||| |||||||||||    
T  14309119 ttgtgtaattaatgcattggaaattgaaaactttgatatttttaaagaataactacttaatttaatatgcttaaaga 14309195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 7211002 - 7210952
Alignment:
Q  140 tgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataa 190  Q
    |||||||| |||||||||||| |||||  ||||||||||||||| ||||||    
T  7211002 tgtgtattcaatacattggaatttgaagtgtttaacttttttaacgaataa 7210952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 16161492 - 16161414
Alignment:
Q  140 tgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtg 218  Q
    |||||||||||| ||||| ||||||||   |||||||||||| || ||||| ||| ||||||   ||||||||||||||    
T  16161492 tgtgtatttaatccattgaaaattgaattatttaactttttttaaaaataatttcctaatttggaatgcttaaagagtg 16161414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 34032153 - 34032223
Alignment:
Q  170 tttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtctcaagaacactcgttcacaa 240  Q
    ||||||||||||||||||||| | | || ||||  |||||||||||||| | |||| ||||||||| ||||    
T  34032153 tttaacttttttaaagaataattacttattttagaatgcttaaagagtgccccaaggacactcgttaacaa 34032223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 46592501 - 46592579
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagt 217  Q
    |||| ||||||||| |||||||||| ||| |||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  46592501 ttgtctatttaatatattggaaattaaactgtttgacttttttaaagaataacttcctaatttagcatgcttaaagagt 46592579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 5250933 - 5251012
Alignment:
Q  139 ttgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtg 218  Q
    ||||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||| |||||||  ||| ||||||||||    
T  5250933 ttgtgtatttaatacattgaaaattaaactgtttgacttttttaaagaataacttcctaatttagtatgtttaaagagtg 5251012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 5423781 - 5423854
Alignment:
Q  142 tgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaaga 215  Q
    |||||||||| ||||| |||||||||  ||||||||||||||||||||| ||  |||||||| |||||||||||    
T  5423781 tgtatttaatgcattgaaaattgaactatttaacttttttaaagaataattttctaatttaaaatgcttaaaga 5423854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 39912262 - 39912323
Alignment:
Q  159 aaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtc 220  Q
    ||||||||  |||| ||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  39912262 aaattgaattgtttgacttttttaaataataacttcctaatttagcatgcttaaagagtgtc 39912323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 10370419 - 10370494
Alignment:
Q  142 tgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagt 217  Q
    |||||||||||  || |||||||||   ||||||||||||||| ||||| |||||||||||| || ||||||||||    
T  10370419 tgtatttaatattttagaaattgaattatttaacttttttaaaaaataatttcataatttaaaatacttaaagagt 10370494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 44442323 - 44442243
Alignment:
Q  140 tgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtc 220  Q
    ||||||||||||  |||| ||||||||   ||| ||||||||||||||||| ||| |||||||| || |||||| ||||||    
T  44442323 tgtgtatttaatgtattgaaaattgaaatatttgacttttttaaagaataatttcctaatttaaaatacttaaaaagtgtc 44442243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 1601020 - 1600951
Alignment:
Q  142 tgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgctta 211  Q
    |||||||||| |||| ||||||||||  |||||| |||||||||||||| ||  |||||||  |||||||    
T  1601020 tgtatttaatgcatttgaaattgaactatttaacatttttaaagaataattttgtaatttagaatgctta 1600951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 4521054 - 4521091
Alignment:
Q  153 cattggaaattgaaccgtttaacttttttaaagaataa 190  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  4521054 cattggaaattgaaatgtttaacttttttaaagaataa 4521091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 219261 - 219183
Alignment:
Q  142 tgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtc 220  Q
    |||||||||| |||||||||||||||  ||| |||||| |||||||||| ||| |||||||| ||||||||||| ||||    
T  219261 tgtatttaatgcattggaaattgaactatttgacttttgtaaagaataatttcctaatttaaaatgcttaaagaatgtc 219183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 25028731 - 25028811
Alignment:
Q  140 tgtgtatttaatacattggaaattgaaccgtttaacttttttaaagaataacttcataatttaacatgcttaaagagtgtc 220  Q
    |||||||| ||| ||||| ||||||||| |||| ||||||||||||||||| ||  ||||||   ||| ||||||||||||    
T  25028731 tgtgtattcaatgcattgaaaattgaactgtttgacttttttaaagaataattttctaattttgaatgtttaaagagtgtc 25028811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 189112 - 189063
Alignment:
Q  170 tttaacttttttaaagaataacttcataatttaacatgcttaaagagtgt 219  Q
    ||||||||||||||||||||| | | || ||||| |||||||||||||||    
T  189112 tttaacttttttaaagaataattgcttattttaaaatgcttaaagagtgt 189063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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