View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15349_low_5 (Length: 367)

Name: NF15349_low_5
Description: NF15349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15349_low_5
NF15349_low_5
[»] chr3 (5 HSPs)
chr3 (250-348)||(7942127-7942229)
chr3 (194-308)||(23231705-23231819)
chr3 (181-252)||(2474436-2474507)
chr3 (181-254)||(9609030-9609103)
chr3 (206-239)||(37754050-37754083)
[»] chr7 (2 HSPs)
chr7 (197-344)||(27754856-27755003)
chr7 (127-349)||(39298363-39298579)
[»] chr2 (3 HSPs)
chr2 (121-344)||(33037365-33037588)
chr2 (286-344)||(33019471-33019529)
chr2 (268-344)||(33025869-33025945)
[»] chr6 (2 HSPs)
chr6 (197-281)||(24418155-24418239)
chr6 (204-241)||(19118335-19118372)
[»] chr5 (2 HSPs)
chr5 (197-311)||(20305097-20305211)
chr5 (197-311)||(20309501-20309615)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 250 - 348
Target Start/End: Complemental strand, 7942229 - 7942127
Alignment:
Q  250 aaggagttgttgagacagcgaagttgaaggagatgctttacgggtagtctgc----atagaatttcagcgatgagatcgaaggtgagagtgggtagtggt 345  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    ||||||||||||| ||||||||||||||||||||||||||||||    
T  7942229 aaggagttgttgagacagcgaagttgaaggagatgctttacggatagtctgcatatatagaatttcagcaatgagatcgaaggtgagagtgggtagtggt 7942130  T
Q  346 gat 348  Q
    |||    
T  7942129 gat 7942127  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 308
Target Start/End: Original strand, 23231705 - 23231819
Alignment:
Q  194 tgattgagaagcgaaggtgtttctttgcgaattttggatcggagattaaataattaaaggagttgttgagacagcgaagttgaaggagatgctttacggg 293  Q
    ||||||| ||||||||||||||||||||||| || ||||| |||||||    ||| ||||| ||  ||||||| |||||||| |||||  |||| || ||    
T  23231705 tgattgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacagg 23231804  T
Q  294 tagtctgcatagaat 308  Q
     ||||||||||||||    
T  23231805 aagtctgcatagaat 23231819  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 2474507 - 2474436
Alignment:
Q  181 aggtggtggcgtttgattgagaagcgaaggtgtttctttgcgaattttggatcggagattaaataattaaag 252  Q
    ||||||||||| ||| |||| ||  |||||||||||||||||||| | |||| ||| |||||| ||||||||    
T  2474507 aggtggtggcgcttgtttgataattgaaggtgtttctttgcgaatctgggattggaaattaaagaattaaag 2474436  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 9609030 - 9609103
Alignment:
Q  181 aggtggtggcgtttgattgagaagcgaaggtgtttctttgcgaattttggatcggagattaaataattaaagga 254  Q
    ||||||||||| |||||||| || |||||||| ||||| |||||||| ||||| || ||||  ||||| |||||    
T  9609030 aggtggtggcgcttgattgataaacgaaggtgcttcttggcgaatttcggatctgaaattaggtaattgaagga 9609103  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 37754050 - 37754083
Alignment:
Q  206 gaaggtgtttctttgcgaattttggatcggagat 239  Q
    ||||||| ||||||||||||||||||||||||||    
T  37754050 gaaggtgcttctttgcgaattttggatcggagat 37754083  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 197 - 344
Target Start/End: Complemental strand, 27755003 - 27754856
Alignment:
Q  197 ttgagaagcgaaggtgtttctttgcgaattttggatcggagattaaataattaaaggagttgttgagacagcgaagttgaaggagatgctttacgggtag 296  Q
    |||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||| ||   ||| || | ||||||||| ||   ||| ||||| ||    
T  27755003 ttgacaagcgaaggtgtttcttggcaaattttggatcggagattaaagaattaaaggacttacagaggcatcaaagttgaagtagtaacttcacgggaag 27754904  T
Q  297 tctgcatagaatttcagcgatgagatcgaaggtgagagtgggtagtgg 344  Q
      |||| ||||| ||  ||||||||||||| || |||||||| |||||    
T  27754903 catgcacagaatctcttcgatgagatcgaatgtaagagtgggaagtgg 27754856  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 349
Target Start/End: Complemental strand, 39298579 - 39298363
Alignment:
Q  127 attggggaatcaaagagaagaaactcttttgattcatttgtagagcttaccagaaggtggtggcg-tttgattgagaagcgaaggtgtttctttgcgaat 225  Q
    |||||||||||||| ||||||||||| | | | |||||||||||||||||||  |||||||||||   |||||       ||||||| ||||| ||||||    
T  39298579 attggggaatcaaacagaagaaactcctgtaactcatttgtagagcttaccatgaggtggtggcgccatgatt-------gaaggtgcttcttcgcgaat 39298487  T
Q  226 tttggatcggagattaaataattaaaggagttgttgagacagcgaagttgaaggagatgctttacgggtagtctgcatagaatttcagcgatgagatcga 325  Q
    || ||||| ||||||| | | ||  || | ||   ||||||  |||||||||||||  |||| || ||||  ||  ||||||||||||||||||||||||    
T  39298486 ttgggatctgagattagagatttccagaactttccgagacattgaagttgaaggaggagcttcactggtaacctagatagaatttcagcgatgagatcga 39298387  T
Q  326 aggtgagagtgggtagtggtgatt 349  Q
    |||| |||| ||| ||||| ||||    
T  39298386 aggtaagagagggaagtggggatt 39298363  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 121 - 344
Target Start/End: Complemental strand, 33037588 - 33037365
Alignment:
Q  121 gaggggattggggaatcaaagagaagaaactcttttgattcatttgtagagcttaccagaaggtggtggcgtttgattgagaagcgaaggtgtttctttg 220  Q
    ||||| |||||||||||||||||||  ||||| | | | || ||  ||||||||| ||  || ||||||||  || |||| | |||||| |||||||| |    
T  33037588 gagggcattggggaatcaaagagaactaactcgtctaagtcgttattagagcttaacatgagatggtggcgcgtgtttgacatgcgaagatgtttcttag 33037489  T
Q  221 cgaattttggatcggagattaaataattaaaggagttgttgagacagcgaagttgaaggagatgctttacgggtagtctgcatagaatttcagcgatgag 320  Q
    ||||||| ||||| || |||||  |||| |  || ||   |||||| |||||||||| |||  | ||||| || |||||||||||||||||||||| |||    
T  33037488 cgaatttaggatcagaaattaacgaattgatagacttacagagacatcgaagttgaatgaggagttttaccggaagtctgcatagaatttcagcgacgag 33037389  T
Q  321 atcgaaggtgagagtgggtagtgg 344  Q
    ||| || |  ||||||||||||||    
T  33037388 atcaaacggaagagtgggtagtgg 33037365  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 344
Target Start/End: Complemental strand, 33019529 - 33019471
Alignment:
Q  286 tttacgggtagtctgcatagaatttcagcgatgagatcgaaggtgagagtgggtagtgg 344  Q
    ||||| || |||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  33019529 tttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtgg 33019471  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 33025945 - 33025869
Alignment:
Q  268 cgaagttgaaggagatgctttacgggtagtctgcatagaatttcagcgatgagatcgaaggtgagagtgggtagtgg 344  Q
    |||||||||| |||  | ||||| || |||||||||||||||||||||||||||||||| |  ||||| ||||||||    
T  33025945 cgaagttgaatgaggagttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtgg 33025869  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 281
Target Start/End: Original strand, 24418155 - 24418239
Alignment:
Q  197 ttgagaagcgaaggtgtttctttgcgaattttggatcggagattaaataattaaaggagttgttgagacagcgaagttgaaggag 281  Q
    |||| ||||||||||| || ||||||||||| ||||| ||||||||  |||| ||||| |||  |||||||||||||||||||||    
T  24418155 ttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaatgaattgaaggacttgcagagacagcgaagttgaaggag 24418239  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 19118372 - 19118335
Alignment:
Q  204 gcgaaggtgtttctttgcgaattttggatcggagatta 241  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  19118372 gcgaaggtgtttctttgcgaatttgggatcggaaatta 19118335  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 20305211 - 20305097
Alignment:
Q  197 ttgagaagcgaaggtgtttctttgcgaattttggatcggagattaaataattaaaggagttgttgagacagcgaagttgaaggagatgctttacgggtag 296  Q
    |||| ||||||||||| ||||| |||||||| ||||||| ||||| | |||| ||||| |||   ||||| |||||||| | |||   ||| | ||| ||    
T  20305211 ttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaagagtaacttaatgggaag 20305112  T
Q  297 tctgcatagaatttc 311  Q
    |||||||||||||||    
T  20305111 tctgcatagaatttc 20305097  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 20309615 - 20309501
Alignment:
Q  197 ttgagaagcgaaggtgtttctttgcgaattttggatcggagattaaataattaaaggagttgttgagacagcgaagttgaaggagatgctttacgggtag 296  Q
    |||| ||||||||||| ||||| |||||||| ||||||| ||||| | |||| ||||| |||   ||||| |||||||| | |||   ||| | ||| ||    
T  20309615 ttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaagagtaacttaatgggaag 20309516  T
Q  297 tctgcatagaatttc 311  Q
    |||||||||||||||    
T  20309515 tctgcatagaatttc 20309501  T

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